BAC Information

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BAC

Clone NameMSMg01-099K01
Chromosome16 (Build37)
Map Location 97,430,971 - 97,431,304
singlet/doubletsinglet
Overlap genenone
Upstream geneSh3bgr, B3galt5, Jam4, Itgb2l, Pcp4, Dscam
Downstream geneBace2, Mx1, ORF9, EG668559, LOC100041436, Mx2, Tmprss2, Ripk4, Prdm15, 5830404H04Rik, Zfp295, LOC100041502, A630089N07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099K01.T7 (MSMg01no099_k01.b1)MSMg01-099K01.TJ (MSMg01no099_k01.g1)
ACCAG315520AG315521
length1,014699
length of high quality
(start - end)
---334 (56 - 389)
definitionCHROMAT_FILE: MSMg01no099_k01.b1 PHD_FILE: MSMg01no099_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:12 2005CHROMAT_FILE: MSMg01no099_k01.g1 PHD_FILE: MSMg01no099_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTTTTCTCCCTCCATTAACCCCCCTTCCTTATTTTTTTTCTTTCTTTC
TCTTCTGCCCTCGCTTTTCTCCCCCCCATATCTATAAATTTGGCGGCCGC
TTAATACGTACTTCACTATTTCTCAAGAGAGATCCGNNNGGAATTCACTG
CATCTTCCCCTTCATGTACTCGAAGCTCATTTCTTCGCCTGTCTGTTACG
ATAACTCCTCTATGCTGCGTTACACGCCGCACTTCTTCCTTATCTTGTCT
ATTTCAATTTCACGTTTTGTTGTAAGGCCCTGCAGAAATTTCTACTATCA
ACTATTTGCATAGTATACTTATCTTACCAGCTTATCTATTTCTTTATAAT
TACCTGATTGTCATGCTTTAGCGATCTTCAGCCAATGTTTACCCCTAATT
ACTGACTTGAGCGAAATCACTACATTTCCTGCCTCAACTTTCCTGTTAAT
ACCTCACCCCTTACTAGTTTCCTACTTATTCTTAAATGCCGAACCTCACA
AATCATTATGCGATATCCACATTGATCTCATTAAATTCCCTACCACCCGA
CAAACATTTATGCTTCATCTTTCCTCTCTTCTCTATTACCCTTTCCTGGC
CGCCCTCTGATTATTTTCGCAGTTCCTCATCATCAGACTTTTTCCACTTT
TCATGGATCTATTTGTCATTTTATTATCCTGTTATAGAAATAGCCATCCT
AACCATTTTTATCTTCACTCACTTTTTACTCATATTTACTTCTCTCACAT
GCTTGTTGCAACAGCACTTTTTTTTTTATTTGTTACCAGTTATTTCTACC
GCCCTTTTTTTATTCCTTTAGGCCATTAGGCTTTCTTAATGTTCTTTTTT
CCTCTCCTTATGCACTATTCCTTCCACATCTTGAAATTATCCCATATTCG
TACTCTCTCTCTCTCACCCTCACTTTCTTCCTTTCGTCAACCTAAACTCT
TCTTATTTCCCCTAATATTCCCTCATTGTGCTCGCTCGCTCTCTTCAACT
TCTCTTTCTTTCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCACAGAGCTTTTCTGAGCACCATGAGGAGAGAAAATAATTAATAG
CATTGTAGTTACAAAAAGGTCTTAAAGTAAGAACAAGATGACATTTTTTC
CCACTGACAATTAATCATCCTTTTGATATAAAGGTTTATCAGAGTTTTCT
AGACAAAGTCAGTAGGATGGAGTGAAAAAAGATAAGAAAGAGAAATGGAG
GAAGGGAGCAAAACGGAAGATGGCAGGAATGAGAGGGGAAAGGGGGAGAG
AAAGAAAAGGATAACAGGGTAGCTGACAGATCAATAATGGTTAACAGATG
ATATAAGAATGATATAAGACATAATAGCTAGCTAGATAATAGACTTTAGA
GATAGCGTGGATGATAAGGATTGATAGCCTATCAGCAGATATTTATTTGT
AGATTATAGATATATGGATGGTAGATGATTGATAGATGGATGCATAGATA
GATGGATGGATGGACTGATAGATACAGATGATCACCGGTTACTACCTATC
CCGATATAGATCCATTACCGCACCCCTACATACATATATATTATATCCTT
TTATACCCCTCCTCTACCCTCTTATTTTATCCGTCTCTATTTTCTCTTCT
TTTATTCTCTTTTCCCCACAGCCTCCCTGACCACCTTTTCCTTCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_k01.g1 MSMg01no099_k01.g1 CHROMAT_FILE:
MSMg01no099_k01.g1 PHD_FILE: MSMg01no099_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:12 2005
         (334 letters)



>mm_chr16_97430947_97431680
          Length = 734

 Score =  623 bits (322), Expect = 0.0
 Identities = 331/334 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagagcttttctgagcaccatgaggagagaaaataattaatagcattgtagttacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 cacagagcttttctgagcaccatgaggagagaaaataattaatagcattgtagttacaaa 299

                                                                       
Query: 61  aaggtcttaaagtaagaacaagatgacattttttcccactgacaattaatcatccttttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 aaggtcttaaagtaagaacaagatgacattttttcccactgacaattaatcatccttttg 239

                                                                       
Query: 121 atataaaggtttatcagagttttctagacaaagtcagtaggatggagtgaaaaaagataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 atataaaggtttatcagagttttctagacaaagtcagtaggatggagtgaaaaaagataa 179

                                                                       
Query: 181 gaaagagaaatggaggaagggagcaaaacggaagatggcaggaatgagaggggaaagggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gaaagagaaatggaggaagggagcaaaacggaagatggcaggaatgagaggggaaagggg 119

                                                                       
Query: 241 gagagaaagaaaaggataacagggtagctgacagatcaataatggttaacagatgatata 300
           |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 118 gagagaaagaaaaggataacagggtaactgacagatcgataatggttaacagatgatata 59

                                             
Query: 301 agaatgatataagacataatagctagctagataa 334
           |||||||||||||| |||||||||||||||||||
Sbjct: 58  agaatgatataagatataatagctagctagataa 25


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)