BAC Information

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BAC

Clone NameMSMg01-099M12
Chromosome16 (Build37)
Map Location 41,648,375 - 41,772,608
singlet/doubletdoublet
Overlap geneLsamp
Upstream geneEG667450
Downstream geneGap43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099M12.T7 (MSMg01no099_m12.b1)MSMg01-099M12.TJ (MSMg01no099_m12.g1)
ACCAG315638AG315639
length721744
length of high quality
(start - end)		583 (44 - 626)440 (77 - 516)
definitionCHROMAT_FILE: MSMg01no099_m12.b1 PHD_FILE: MSMg01no099_m12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:25 2005CHROMAT_FILE: MSMg01no099_m12.g1 PHD_FILE: MSMg01no099_m12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,772,030 - 41,772,608)(41,648,375 - 41,648,814)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAACAGGTTAAACCTACATCTTGTGGAAAGTGTCCGTTTATTCTAAAT
TTACCACCCACTAATGCCGCCAAGTGACCCCTTGTTCTTTGTGGTAACAG
AGGAATAGCTAGAGAAAGCTGCAGCCCAGCTCAGGCAAGCCATATCCAAC
TGTGTCTTCCAGTTTCTTGTTCACTTCTATTTGTAGGTAAATAAGCATCC
AAGCCCCTGTCTGGGAAATGCAGCCCAAACTCCCACCACCTTGTCAAACT
CTTCAAGGGAGACATTATTGCCTTAATTGCTTAAGCCCAATTTGCATAAT
ATGGAGTTCTGACAGCCACAAAAACAGGGATGCAAAAGGGAGATTAACAA
GTGAGGTGCAAGCTCAGCCAGCCCTGTGCAGTTTGAAAATGAGAGCAGAG
AAGAATTCATCGGATGGGTGGGTTCCCTGTTTCATCTGCTCTCAGACCCT
CCTCCCTCCCCTCCCTCTCTCCATCCCACCTTCAGGTTTGTTTGTTTTTC
ATTTGCATGCATTGGCTCCTGCCTGTGCCCTGACTACTAATTGCAATTCC
TAGCACAGCCTCCTTCTGGGGCCCTGGTACAGCTCATGCAGCACCAGCCA
GTAGAGATTTACAAACAGCCTTGGCTCTTTCCACAGAGTGCATCCCAACA
TCCAGGATGTTAGTGCTTCTC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTCCACAAGAGTCTATGAACAT
GATGTAAAGAATTAAGTCTTCGGCAGAATGTCTATGTTAGGATAGCAAGA
ATATTCATCTAGATACAGAGATGTATGTGTTAGATAGTCTGAAGCCTGGG
AATGGTTAAATGCTATTGCTTTCTTCTCTCAATTGTTTGATAATATCTCA
ATTAGATATTTCTACCTTACTAATATACATATGTCATGTTGAAGAAAGTT
GCCCTAACCTCCCACTACTCGCTTTTACTGGTAACTTACTTCAATTAGGA
AGTTTTTCTTCTCAGTCTTCTTCTGTTCAGACGACTGTCACTCCAATCTT
ACCACAATAGAGTGAACATCTAGTAACAGAAACCAACCTATAAACTTACC
CAGGTAGAACTAACCTAACACGACAGACTGTGGAACAGCCATTTGCTCTG
GATGTTTACTGGGGATATTTCTACAAAATGCTTTCATTACCAAAGGAAAT
TTGAAGCACACTCTTACAGAGAACCAGGTATTAAAACTCATAAGAAGCTA
AGTTTTCATAATAACCATCAACCCCTATTTATTCTTGGATTAACCCCCTT
GCTATGAAGTTTGACTATTAAATCGAGAGGATTTTGGCTCTCCACCAACC
GGCACAAAATAACCTATGTGCCTGCGCGTGCTTCGAATGTTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_m12.b1 MSMg01no099_m12.b1 CHROMAT_FILE:
MSMg01no099_m12.b1 PHD_FILE: MSMg01no099_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:25 2005
         (583 letters)



>mm_chr16_41771826_41772808
          Length = 983

 Score = 1112 bits (575), Expect = 0.0
 Identities = 578/579 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaacaggttaaacctacatcttgtggaaagtgtccgtttattctaaatttaccac 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 gaattcaacaggttaaaactacatcttgtggaaagtgtccgtttattctaaatttaccac 724

                                                                       
Query: 65  ccactaatgccgccaagtgaccccttgttctttgtggtaacagaggaatagctagagaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ccactaatgccgccaagtgaccccttgttctttgtggtaacagaggaatagctagagaaa 664

                                                                       
Query: 125 gctgcagcccagctcaggcaagccatatccaactgtgtcttccagtttcttgttcacttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gctgcagcccagctcaggcaagccatatccaactgtgtcttccagtttcttgttcacttc 604

                                                                       
Query: 185 tatttgtaggtaaataagcatccaagcccctgtctgggaaatgcagcccaaactcccacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tatttgtaggtaaataagcatccaagcccctgtctgggaaatgcagcccaaactcccacc 544

                                                                       
Query: 245 accttgtcaaactcttcaagggagacattattgccttaattgcttaagcccaatttgcat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 accttgtcaaactcttcaagggagacattattgccttaattgcttaagcccaatttgcat 484

                                                                       
Query: 305 aatatggagttctgacagccacaaaaacagggatgcaaaagggagattaacaagtgaggt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 aatatggagttctgacagccacaaaaacagggatgcaaaagggagattaacaagtgaggt 424

                                                                       
Query: 365 gcaagctcagccagccctgtgcagtttgaaaatgagagcagagaagaattcatcggatgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gcaagctcagccagccctgtgcagtttgaaaatgagagcagagaagaattcatcggatgg 364

                                                                       
Query: 425 gtgggttccctgtttcatctgctctcagaccctcctccctcccctccctctctccatccc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gtgggttccctgtttcatctgctctcagaccctcctccctcccctccctctctccatccc 304

                                                                       
Query: 485 accttcaggtttgtttgtttttcatttgcatgcattggctcctgcctgtgccctgactac 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 accttcaggtttgtttgtttttcatttgcatgcattggctcctgcctgtgccctgactac 244

                                                  
Query: 545 taattgcaattcctagcacagcctccttctggggccctg 583
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 243 taattgcaattcctagcacagcctccttctggggccctg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space:   557529
Effective search space used:   557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no099_m12.g1 MSMg01no099_m12.g1 CHROMAT_FILE:
MSMg01no099_m12.g1 PHD_FILE: MSMg01no099_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:25 2005
         (440 letters)



>mm_chr16_41648175_41649014
          Length = 840

 Score =  835 bits (432), Expect = 0.0
 Identities = 438/440 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttccacaagagtctatgaacatgatgtaaagaattaagtcttcggcagaatgtctatg 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 acttccacaagagtctatgaacatgatgtaaagaattaagtctttggcagaatgtctatg 260

                                                                       
Query: 61  ttaggatagcaagaatattcatctagatacagagatgtatgtgttagatagtctgaagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaggatagcaagaatattcatctagatacagagatgtatgtgttagatagtctgaagcc 320

                                                                       
Query: 121 tgggaatggttaaatgctattgctttcttctctcaattgtttgataatatctcaattaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggaatggttaaatgctattgctttcttctctcaattgtttgataatatctcaattaga 380

                                                                       
Query: 181 tatttctaccttactaatatacatatgtcatgttgaagaaagttgccctaacctcccact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatttctaccttactaatatacatatgtcatgttgaagaaagttgccctaacctcccact 440

                                                                       
Query: 241 actcgcttttactggtaacttacttcaattaggaagtttttcttctcagtcttcttctgt 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actcgcttttactgggaacttacttcaattaggaagtttttcttctcagtcttcttctgt 500

                                                                       
Query: 301 tcagacgactgtcactccaatcttaccacaatagagtgaacatctagtaacagaaaccaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcagacgactgtcactccaatcttaccacaatagagtgaacatctagtaacagaaaccaa 560

                                                                       
Query: 361 cctataaacttacccaggtagaactaacctaacacgacagactgtggaacagccatttgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctataaacttacccaggtagaactaacctaacacgacagactgtggaacagccatttgc 620

                               
Query: 421 tctggatgtttactggggat 440
           ||||||||||||||||||||
Sbjct: 621 tctggatgtttactggggat 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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