Query= MSMg01no100_b14.b1 MSMg01no100_b14.b1 CHROMAT_FILE:
MSMg01no100_b14.b1 PHD_FILE: MSMg01no100_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:51 2005
(603 letters)
>mm_chr16_63705899_63706901
Length = 1003
Score = 1151 bits (595), Expect = 0.0
Identities = 601/603 (99%)
Strand = Plus / Minus
Query: 1 gcctcgggctggggaggagtgttgaggagctcatagttaggtgtccttagaactacatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gcctcgggctggggaggagtgttgaggagctcatagttaggtgtccttagaactacatcc 627
Query: 61 ataagacttgtggattcttatatatgtagccaacacgctttgtggtagtttaaactgcgg 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 626 ataagacttgtggattcttatatatgtagccaacacgctttgtggtagtctaaactgcgg 567
Query: 121 aaaattcgaaccaaatgtgtatatagttgggttttttcttcatttttaaaaatataatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aaaattcgaaccaaatgtgtatatagttgggttttttcttcatttttaaaaatataatat 507
Query: 181 atttaaaatagcagactgtagagtatttaaactctcaaagaaggctttgattttaaaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 atttaaaatagcagactgtagagtatttaaactctcaaagaaggctttgattttaaaagt 447
Query: 241 gaattgctatgttaaatgagcaaaaattgtttcaaaattcaatgattgttgttttgatat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gaattgctatgttaaatgagcaaaaattgtttcaaaattcaatgattgttgttttgatat 387
Query: 301 tatttaaatatttgttactgttttattttttatttattacaacaagtacaaaatcatatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tatttaaatatttgttactgttttattttttatttattacaacaagtacaaaatcatatt 327
Query: 361 tcatgtaaaatgaaatatttctactagacctaagaattaattttaaataaaagatccttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcatgtaaaatgaaatatttctactagacctaagaattaattttaaataaaagatccttt 267
Query: 421 atttattaatgacattgatatgtgctgttggtcttctcaaatgagggaacttcactttaa 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 266 atttattaatgacattgatatgtgctgttggtcttctcaaatgagggaacttgactttaa 207
Query: 481 aatttacagctgtttaattatattcacacatattagctacatattggattactggttgag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aatttacagctgtttaattatattcacacatattagctacatattggattactggttgag 147
Query: 541 ttatgtatttaaatattgaaagtgatattaaaatttctatgacattcagtatctttcaac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ttatgtatttaaatattgaaagtgatattaaaatttctatgacattcagtatctttcaac 87
Query: 601 tca 603
|||
Sbjct: 86 tca 84
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no100_b14.g1 MSMg01no100_b14.g1 CHROMAT_FILE:
MSMg01no100_b14.g1 PHD_FILE: MSMg01no100_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:51 2005
(550 letters)
>mm_chr16_63597600_63598550
Length = 951
Score = 1019 bits (527), Expect = 0.0
Identities = 545/551 (98%), Gaps = 1/551 (0%)
Strand = Plus / Plus
Query: 1 aataaatgaaaggcagccatggtctgagagtctataagtctggcacctttgaaataatta 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 aataaatgaaaggcagccatggtctgagagtctgtaagtctggcacctttgaaataatta 260
Query: 61 cattccattaaatgctgtatttatttattgcctgtctttgatcatgaaatcagaaaatgc 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattccattaagtgctgtatttatttattgcctgtctttgatcatgaaatcagaaaatgc 320
Query: 121 ctgtctccacagtagtacacctactaacaagctcatgttcctgctgtagtgttcttacag 180
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 321 ctgtctccacagtagtacacctactaacaagctcatgttcctgctgtagcgttcttactg 380
Query: 181 ttagtttggtaggagaactattggcatgctagttacctgctccaacaactttgtcgatgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttagtttggtaggagaactattggcatgctagttacctgctccaacaactttgtcgatgg 440
Query: 241 atatattggtggcatccaactccttcgcgaactcatgaactgcttgagtagggtcttcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatattggtggcatccaactccttcgcgaactcatgaactgcttgagtagggtcttcat 500
Query: 301 atgtatgtggatcaacataggtcctgagacctggaagttttactatcaacaaaaagaaaa 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 atgtatgtggatcaacataggtcctgagacctggaagttttactgtcaacaaaaagaaaa 560
Query: 361 gcatgattttactgagcaaatttcaaaatcttactcgctaaaaaaaatctctatcacact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcatgattttactgagcaaatttcaaaatcttactcgctaaaaaaaatctctatcacact 620
Query: 421 aatttgtatcgatctgtaggctactctgtaatattaaaaaaaaa-tctcatggagatata 479
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 aatttgtatcgatctgtaggctactctgtaatattaaaaaaaaaatctcatggagatata 680
Query: 480 ttaattgtaagaaaaaagttttctgcattagagtacaaagaggaagcacaataaagtatc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttaattgtaagaaaaaagttttctgcattagagtacaaagaggaagcacaataaagtatc 740
Query: 540 ttctctgctaa 550
|||||||||||
Sbjct: 741 ttctctgctaa 751
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 951
Length adjustment: 10
Effective length of query: 540
Effective length of database: 941
Effective search space: 508140
Effective search space used: 508140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
