BAC Information

Click to search

BAC

Clone NameMSMg01-101M22
Chromosome16 (Build37)
Map Location 74,036,042 - 74,036,554
singlet/doubletsinglet
Overlap geneRobo2
Upstream geneRobo1, LOC100039310, LOC100039318, LOC100039326
Downstream geneLOC665042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101M22.T7 (MSMg01no101_m22.b1)MSMg01-101M22.TJ (MSMg01no101_m22.g1)
ACCAG317123AG317124
length7671,100
length of high quality
(start - end)
532 (111 - 642)---
definitionCHROMAT_FILE: MSMg01no101_m22.b1 PHD_FILE: MSMg01no101_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:10 2005CHROMAT_FILE: MSMg01no101_m22.g1 PHD_FILE: MSMg01no101_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTNNNNTTTTNNNNNTTTNNNNNTTTTTTTTTTTTNTCTTTTCCCCCN
NCCCCAATTATTTTNNNCTCTATAATTGCGGCGCTAAACGACTCACTTTC
CAAAGAGGACCGCGGAATTCCTTGTTACCAAAATTCCCTTGGCATTTCAC
AATTGTTTTCTGAATATTGATCTTGATGTCAATAAAAATGCATATTCACA
ACCTGTGTTCTTAGTGTGTTATTTTAAGTGATTTAGTTTCAAGGAAGGTT
TCCTGCTCAATGCATTTCTTTCTATGTGACATTATTTTCACAATTCTAAA
TTGGAACAGTTGAAACTGAAGTCTTCAAAGGCTAACCATGGCCATATGGC
CAGGTTCACTTTGCCATCTCCCCCTGGAACTCACTTGTCTTTCATGAGTT
AGATTACTTTCTCCTTCAGAAACTTGCACACTGGAGTTAAAATGTGATTC
AGAAGGCAGTGTTCATAAAATTTAAGAGGGACATTTTCTAGTGGCTGCTC
TTTATCCAAAAAGAAAGATACTGGACAAGGGATGTAACTGTTTTGGGGTT
GCGGTGGCTAAACTGGCTTTGTCTCATGTATCTCTTTGATGGTAAGACCC
TTATAATTAAGAATAATTTTCATTGTATAGAAAAGTGCTAGAATATAGTG
AAAAATGTATAATTAAAAGACTGGAATACTAAAGAATATTACTGAAAAAA
AACTGAACAAATTTAGGTAGGATAGAAAATAATTAGCAAAACAAAAACTG
AATTTTAAAAATATTCA
NNNNNNNNNNNNNNNNNNNNNNTTGGGGNTTTTNNNNNNNNNNNNNNNNT
TTTTTNNNNNNTTTNNNGNNNNNCCNNTCCCCTCCGCCGCCCCCCNNCCC
CTTTNNGGGGCGCTCCCCCCCCCTAAAAAAGAATTACATATTTTCANTNT
ATTTANNNANNNCGGCGCCAAAATGTCCATATAGGGATGGGTTAAGGGCC
CTTGGGNCGAGAACCGGCCCTGGGTTTGCAACGAACATTGGTGAGGNGGA
AAACTTATTAAGAAAGGTTTTCTGCCGAGAAATTTTCATGGCCTTAAAAA
TAAATATAATATTATTATTATTAAACCACCCCCCCCTCCCCCTCCCTTAT
TTTTATTTATACAAACAATTTTTAAATAAATAATAAAAAACCTAAATAAA
AAGTGGGGCCCCCCTCTTTTTTTCTTTTATTGGGGGGTAAAATAATTTAA
TATAAAAATTATTTTTTATTGGGCCCCGCTATAAAACAAAAAATATTAAA
TCCCGCTCAATAATTTATTCTTACAAAAAAAATAAAAAAAAAAAAAAAAT
TTTGCTTGTAATAATAATAAAAATAAAAAACTCCTCCTGTTGGGAGTAAA
TAAAAAAATATTTTTTGTTTTTATTTTTATAAAACAAAATATAATATAAG
GTGAGAGGTTTATGTTATATAATACACAATAAATAGAGTTTTTCTTCTTT
TATTATAAGTATTACACTACTATATCATACATTAATTTTTATATTTCTTC
TTGTTTTGGTGGTTGGTGGGGGGGGCGGGAGCATCTTATTTTTTTATTAT
AATATATATATAAGAAAATGAAAAATATATTCAGAACCTGTCAGTATTTA
CATATTTTTGGTTATCTAATTCTTTATTTATATATATATATTTAAAGTAG
TAAATTTAAAATTATAATTATAAGTTTATAATATATAATGTTATAATTAG
TTAAAAAAGCCACTTGTATATTGTGTGTATACTATCTTCTATGTTGTGAT
TATATTCTCATGATATTAATAAAATTAAAACAATATAAACAATGCTCATT
CATAAAATATATAGTAAATACTATATAAGTATCACGTCAACCATAAANTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_m22.b1 MSMg01no101_m22.b1 CHROMAT_FILE:
MSMg01no101_m22.b1 PHD_FILE: MSMg01no101_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:10 2005
         (532 letters)



>mm_chr16_74035823_74036754
          Length = 932

 Score =  969 bits (501), Expect = 0.0
 Identities = 510/513 (99%)
 Strand = Plus / Minus

                                                                       
Query: 20  aaaattcccttggcatttcacaattgttttctgaatattgatcttgatgtcaataaaaat 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 aaaattcccttggcatttcacaattgttttctgaatattgatcttgatgtcaataaaaat 673

                                                                       
Query: 80  gcatattcacaacctgtgttcttagtgtgttattttaagtgatttagtttcaaggaaggt 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gcatattcacaacctgtgttcttagtgtgttattttaagtgatttagtttcaaggaaggt 613

                                                                       
Query: 140 ttcctgctcaatgcatttctttctatgtgacattattttcacaattctaaattggaacag 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ttcctgctcaatgcatttctttctatgtgacattattttcacaattctaaattggaacag 553

                                                                       
Query: 200 ttgaaactgaagtcttcaaaggctaaccatggccatatggccaggttcactttgccatct 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ttgaaactgaagtcttcaaaggctaaccatggccatatggccaggttcactttgccatct 493

                                                                       
Query: 260 ccccctggaactcacttgtctttcatgagttagattactttctccttcagaaacttgcac 319
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| 
Sbjct: 492 ccccctggaactcacttgtctttcatgacttagattactttctccttcagaaacttgcaa 433

                                                                       
Query: 320 actggagttaaaatgtgattcagaaggcagtgttcataaaatttaagagggacattttct 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 actggagttaaaatgtgattcagaaggcagtgttcataaaatttaagagggacattttct 373

                                                                       
Query: 380 agtggctgctctttatccaaaaagaaagatactggacaagggatgtaactgttttggggt 439
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 agtggctgctctttatctaaaaagaaagatactggacaagggatgtaactgttttggggt 313

                                                                       
Query: 440 tgcggtggctaaactggctttgtctcatgtatctctttgatggtaagacccttataatta 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgcggtggctaaactggctttgtctcatgtatctctttgatggtaagacccttataatta 253

                                            
Query: 500 agaataattttcattgtatagaaaagtgctaga 532
           |||||||||||||||||||||||||||||||||
Sbjct: 252 agaataattttcattgtatagaaaagtgctaga 220


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)