BAC Information

Click to search

BAC

Clone NameMSMg01-101N19
Chromosome16 (Build37)
Map Location 11,648,415 - 11,712,955
singlet/doubletdoublet
Overlap gene4933437K13Rik, LOC100043171
Upstream gene4932416N17Rik, Socs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik, Litaf, LOC100043147, LOC100042597, Snn, Txndc11, Zc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1, Tnfrsf17
Downstream geneC530044N13Rik, 2700045P11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101N19.T7 (MSMg01no101_n19.b1)MSMg01-101N19.TJ (MSMg01no101_n19.g1)
ACCAG317161AG317162
length806736
length of high quality
(start - end)
244 (134 - 377)524 (74 - 597)
definitionCHROMAT_FILE: MSMg01no101_n19.b1 PHD_FILE: MSMg01no101_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:14 2005CHROMAT_FILE: MSMg01no101_n19.g1 PHD_FILE: MSMg01no101_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,712,712 - 11,712,955)(11,648,415 - 11,648,938)
sequence
NNNNNNTTTTNNNNNTTTNNNTTTTTTTTTTCCCCCCCNNCCCNCCTCAT
ATATNTTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAG
AGGATCCGCGGAATTCTATACCTCTCAACTGAGCGTACATGCTGAAAACT
GTTAAGAGTTATTCATTCATTCATTTGTTTAATTACTTAATTGTGTAAAT
AATTACTTTCAAGGACTCTTCCACCCAGATTAAGTTTGACTGGCTCAACT
TTCCTTAGCTTGAGCCACAAAGAAAATGATTCCTTGGTGGAATGAAAAAA
CAGTCTCTTCTACACAACCAAGTTCCCTTCTAAACGATGGATAAAGTCAC
TCATCTCGGTTCAGCAGAAAGAAATAATATATCTTGTTTGTCAGCATCAG
GACCACTGCCTGAAAGGAAAGTATTTACTTTAACAGCCCTTCACTGTAGA
AGTCCATCACTCCCCCCGACCCCCAGAAAGGCCTATACAGAACAAGGAGG
CAACAGTAATTTGAGGTCGTGAGGTGTGGGCCTCAGACCTTTGTTGAGCA
CAGACTACAACATGTGCTTTCATGGACTGTATCTCGAGGATAATAAAAGG
ATCTGGGGTTACGTCTATTGAACAAACAACACAGTCTAATACGTGTACCC
GGAATAACTTTGCTCATTTTTATCTGATAAGAATACGCTAACGACCCTAT
GCAATGCTATTTTGCCATACCCCTTTATAATTTTATGTTCTTTTTTTTTA
TGTCATTATTTGATGTACCTATTTATTGTTTTCCTAACTATTCATAACAT
CAAAAA
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTCATGTGGCAGCAGGCATGGAGGTCAG
GCATGGAGGTCAGGCCTGTGGCCGCTGGCAGCCACATGGAGGGAGCTTTT
GAGAATGAGTAAGGAAGGCCAAAGTACAGGGGATTGGACTTAGGCTCTGA
CAGCCTCAGAAGGAGACAGACCCTAAAGAGGAACAGAGAGAGAGGCCTTT
CCTTTCAGTGGGCAAACCCTACTGAACCCCATGGCAGCTTCTAGGGACTG
CATCAGGGACAGGAGTGATCTCACAGTGATCCAGGCTCTTGACCTGCTCA
ACTGGATTAACTTTGAAGGAAGGAGACAAGGGCATGTCTTCCCCGAGAGG
AGCAGTGTGTCTGGTGCTCTCTGCATGGCATCACTGGGGCTCCTGAGCAG
GGGAGCCTGGGCTGTGCTCACGATACCTGTGCTTCTGCTGTGTGTTCGTG
TGAGGCCTTACGCCATGTCTGTGGATAGAGATGACACCATGGCCCACAGC
TACTGGCTGGAGGGGCCTGGGGTGGGCTGTGTGTGAGCATACTTTGTAGT
GCAGGGAGCCTTTGGTGATGTGTGGTGATTTCTTGTTGGTTGCCCCTTAT
GACTGTGGGTACGGCTTTGCTTTTTCTATTTTGAGGCGGATCTGTCTCAC
AAAGTTGCCTGGGCCTGGCCTTGACCTGTATACCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_n19.b1 MSMg01no101_n19.b1 CHROMAT_FILE:
MSMg01no101_n19.b1 PHD_FILE: MSMg01no101_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:14 2005
         (244 letters)



>mm_chr16_11712512_11713155
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cgtacatgctgaaaactgttaagagttattcattcattcatttgtttaattacttaattg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 444 cgtacatgctgaaaactgttaagagttattcattcattcatttgtttaattaattaattg 385

                                                                       
Query: 61  tgtaaataattactttcaaggactcttccacccagattaagtttgactggctcaactttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgtaaataattactttcaaggactcttccacccagattaagtttgactggctcaactttc 325

                                                                       
Query: 121 cttagcttgagccacaaagaaaatgattccttggtggaatgaaaaaacagtctcttctac 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 324 cttagcttgagccacaaagaaaatgattccttggtggaatgaaaaaccagtctcttctac 265

                                                                       
Query: 181 acaaccaagttcccttctaaacgatggataaagtcactcatctcggttcagcagaaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 acaaccaagttcccttctaaacgatggataaagtcactcatctcggttcagcagaaagaa 205

               
Query: 241 ataa 244
           ||||
Sbjct: 204 ataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no101_n19.g1 MSMg01no101_n19.g1 CHROMAT_FILE:
MSMg01no101_n19.g1 PHD_FILE: MSMg01no101_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:14 2005
         (524 letters)



>mm_chr16_11648215_11649138
          Length = 924

 Score =  975 bits (504), Expect = 0.0
 Identities = 519/524 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatgtggcagcaggcatggaggtcaggcatggaggtcaggcctgtggccgctggcagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tcatgtggcagcaggcatggaggtcaggcatggaggtcaggcctgtggcagctggcagcc 260

                                                                       
Query: 61  acatggagggagcttttgagaatgagtaaggaaggccaaagtacaggggattggacttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatggagggagcttttgagaatgagtaaggaaggccaaagtacaggggattggacttag 320

                                                                       
Query: 121 gctctgacagcctcagaaggagacagaccctaaagaggaacagagagagaggcctttcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctctgacagcctcagaaggagacagaccctaaagaggaacagagagagaggcctttcct 380

                                                                       
Query: 181 ttcagtgggcaaaccctactgaaccccatggcagcttctagggactgcatcagggacagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 ttcagtgggcaaaccctactgaaccccatggcagcttctagggactgcatcagggacaga 440

                                                                       
Query: 241 agtgatctcacagtgatccaggctcttgacctgctcaactggattaactttgaaggaagg 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgatctcacagtgaaccaggctcttgacctgctcaactggattaactttgaaggaagg 500

                                                                       
Query: 301 agacaagggcatgtcttccccgagaggagcagtgtgtctggtgctctctgcatggcatca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agacaagggcatgtcttccccgagaggagcagtgtgtctggtgctctctgcatggcatca 560

                                                                       
Query: 361 ctggggctcctgagcaggggagcctgggctgtgctcacgatacctgtgcttctgctgtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctggggctcctgagcaggggagcctgggctgtgctcacgatacctgtgcttctgctgtgt 620

                                                                       
Query: 421 gttcgtgtgaggccttacgccatgtctgtggatagagatgacaccatggcccacagctac 480
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttcgtgtgaggccttacgacatgtctgtggatagagatgacaccatggcccacagctac 680

                                                       
Query: 481 tggctggaggggcctggggtgggctgtgtgtgagcatactttgt 524
           ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 681 tggctggaggggcctggggtgggctgtgtgtgagcatgctttgt 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)