BAC Information

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BAC

Clone NameMSMg01-104B05
Chromosome16 (Build37)
Map Location 13,780,914 - 13,781,233
singlet/doubletsinglet
Overlap geneRrn3
Upstream geneLOC622553, Ercc4, Gt4-1, Mkl2, Parn, LOC100043196, 3110001I22Rik, Pla2g10, A930007A09Rik, LOC622757
Downstream geneNtan1, Pdxdc1, Mpv17l, Ifitm7, 2900011O08Rik, 4921513D23Rik, Nde1, Myh11, 0610037P05Rik, Abcc1, Gm1758, Snai2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104B05.T7 (MSMg01no104_b05.b1)MSMg01-104B05.TJ (MSMg01no104_b05.g1)
ACCAG318779AG318780
length706688
length of high quality
(start - end)
647 (47 - 693)320 (84 - 403)
definitionCHROMAT_FILE: MSMg01no104_b05.b1 PHD_FILE: MSMg01no104_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:12 2005CHROMAT_FILE: MSMg01no104_b05.g1 PHD_FILE: MSMg01no104_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:03:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAATTCCCAGCAGCCACATGTTGGCTTACAACCATCTGTAATGGA
ATCCAGTGCCCTCTTCTAGCTACATAGTATGCTCATATACGTAAAATAAA
TAAAATCTTTAAAAAAAAATAAGTAACATTTATTATTTTTAAAGACCAGC
TGGGCAGCAGTAGTGTATGCCTTTAATCCCAGCATTCAGAAGGCAGAGGC
AGGCAGATCTGAGTTCAAGGCCAGCTGGTCTACACTGAGATCCAGGACAA
CACAGTGAAACCCTGTCTCAGGGGGAAAAAAATAATAATAATAGTAAGAA
TGATGTGGGACAATGTCTTTATGTTGCTACTATTCACAAATTATTGCTGT
TAATGTCATAATAGACATAACTGAACATGGCGGCACACAGCTAACCCAGC
ACTTGGAAGATGGAGGTAGGAGAGACAGAGTTCAAGGTAAACCTGGGTTA
AACATCACATCCTGTCTCAAAAAAAAACCAAACAACTTATTACACATCTT
TCCAAATCTAAAGGTGTTTCCTTGGCATGCTGGGGATTACATAGGGCTTT
GAACATGCTAGCTGCTTTCTCTACCATTGAAATCCTCCCCAGCCCTAGTG
TTTTTCTGTTCAGTTTATATAGGTATATAAATATAGTGTTGCGGCTTTGG
GGGTTT
CCCCCCACGATGACTGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGTCACCAGTGACAG
CTTTCCCCTAGATATCCAAAACCCTGGAAATGCCGCCCATGTCTTGGCCA
AGAGAGGGAAGAGGAAAGGCACGGAAGATTAGCCTAGAGTCCCACAAGGG
TGCCCCAAGAGTGAGTGGGAAACAATGGAACAGACAAGGCTCGCCCGGGC
AGAGGGGACCCGAGGGAACCAGAGGCTCCTGCGTGCCCGAGCCGAGCCCG
CACGCCCGGCCCCCTCGGCACATGCGTAGAGCTCTCAGCGGGCTCGAGCC
CCGCACCCGCAGGCGGAGGCCGCCCGGATCTTACCCAGTCCGCGACGCAC
TCAGCGTGGCAGAGGCCGCTGCCGTCACATCGCCCGACAAGCGCGTGTGA
AGCAGCGGGGCCGCCATTCGGCCTGAACTGAGTGAACGCCCGGTCTTGCG
CCGGAAGCCTCGACCTACCCGCCCCGGAAGTGGCGCTGCACAAGGTCGCT
CCTTGCGGGACGCGTCCCACGTGAGCAGAGCGTATGGTATTGCAGTCAGA
ATGCGGGCATGTTTGCGTTTGACCTTATCCCGTCCGAAAGCCCTCCCAGA
AATAAGCTGGCCCCCCCTTGTCCCGGCTCACTCGCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_b05.g1 MSMg01no104_b05.g1 CHROMAT_FILE:
MSMg01no104_b05.g1 PHD_FILE: MSMg01no104_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:12 2005
         (320 letters)



>mm_chr16_13780714_13781433
          Length = 720

 Score =  611 bits (316), Expect = e-179
 Identities = 319/320 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggtcaccagtgacagctttcccctagatatccaaaaccctggaaatgccgcccatgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 taggtcaccagtgacagctttcccctagatatccaaaaccctggaaatgccgcccatgtc 461

                                                                       
Query: 61  ttggccaagagagggaagaggaaaggcacggaagattagcctagagtcccacaagggtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ttggccaagagagggaagaggaaaggcacggaagattagcctagagtcccacaagggtgc 401

                                                                       
Query: 121 cccaagagtgagtgggaaacaatggaacagacaaggctcgcccgggcagaggggacccga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 cccaagagtgagtgggaaacaatggaacagacaaggctcgcccgggcagaggggacccga 341

                                                                       
Query: 181 gggaaccagaggctcctgcgtgcccgagccgagcccgcacgcccggccccctcggcacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gggaaccagaggctcctgcgtgcccgagccgagcccgcacgcccggccccctcggcacat 281

                                                                       
Query: 241 gcgtagagctctcagcgggctcgagccccgcacccgcaggcggaggccgcccggatctta 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gcggagagctctcagcgggctcgagccccgcacccgcaggcggaggccgcccggatctta 221

                               
Query: 301 cccagtccgcgacgcactca 320
           ||||||||||||||||||||
Sbjct: 220 cccagtccgcgacgcactca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)