Query= MSMg01no104_m19.b1 MSMg01no104_m19.b1 CHROMAT_FILE:
MSMg01no104_m19.b1 PHD_FILE: MSMg01no104_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:11 2005
(587 letters)
>mm_chr16_45892375_45893361
Length = 987
Score = 1056 bits (546), Expect = 0.0
Identities = 568/584 (97%), Gaps = 14/584 (2%)
Strand = Plus / Minus
Query: 4 ggaattcagtttaagtctccagcaatacatattgcatactgagaatacccccacacagca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ggaattcagtttaagtctccagcaatacatattgcatactgagaatacccccacacag-- 618
Query: 64 cacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca 123
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ------------cacacacacacacacacacacacacacacacacacacacacacacaca 570
Query: 124 ccatacccagcacacttcccttctctcatctcctgactctcttgcttctgagagttccct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ccatacccagcacacttcccttctctcatctcctgactctcttgcttctgagagttccct 510
Query: 184 tagtttccctagacaatttcacctttatttttcccatatgtgtttaagactttatgtaga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tagtttccctagacaatttcacctttatttttcccatatgtgtttaagactttatgtaga 450
Query: 244 catatgaaacataggaatcacaaatgagagaaaacgtagcatgcctcctcctaagactca 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 catatgaaacataggaatcacaaatgagagaaaacgtagcatgcctcctcctaagactca 390
Query: 304 cagcttagcctctctgacagtatacactgacatcaagtatactgagaacttacgttagtc 363
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 389 cagcttagcctctctgacagtatacactgacatcaagtatactgagaacttatgttagtc 330
Query: 364 taaagcagtggttctcaaccttcctaatgcttcggccctttaatacagtactttacattg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 taaagcagtggttctcaaccttcctaatgcttcggccctttaatacagtactttacattg 270
Query: 424 tggtgcacccccaaccataaaattatttttgtttctacttcataactgtaattttgctac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tggtgcacccccaaccataaaattatttttgtttctacttcataactgtaattttgctac 210
Query: 484 tgttgtgaatcacaatataaatatgtgatatacaggatattggatttgtgactcttgtga 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tgttgtgaatcacaatataaatatgtgatatacaggatattggatttgtgactcttgtga 150
Query: 544 aagggtcattgaaacccccaaaaggtcacgactcacaggttgag 587
||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 149 aagggtcattgaaactcccaaaaggtcacgactcacaggttgag 106
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 81
Number of extensions: 29
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no104_m19.g1 MSMg01no104_m19.g1 CHROMAT_FILE:
MSMg01no104_m19.g1 PHD_FILE: MSMg01no104_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:11 2005
(650 letters)
>mm_chr16_45868981_45870030
Length = 1050
Score = 1164 bits (602), Expect = 0.0
Identities = 638/650 (98%), Gaps = 2/650 (0%)
Strand = Plus / Plus
Query: 1 actttgactatgtctgtttacataggcagagatagataagtatctcatatgcctattttt 60
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttagactatgtctgtttacacaggcagagatagataagtatctcatatgcctattttt 260
Query: 61 atatagggcaactggtataaattgtgtctttgaatggttgtttactggactgtattaaat 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatagggcaactggtatatattgtgtctttgaatggttgtttactggactgtattaaat 320
Query: 121 agagtgcaagcatattacaacaattgatcccacatggggtattatagcggtacgttttaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 agagtgcaagcatattacaacaattgatcccacatggggtattatagcggtatgttttaa 380
Query: 181 agccagtgttttattacagtactgctgattacttctccagatggatttaagttgatgctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agccagtgttttattacagtactgctgattacttctccagatggatttaagttgatgctt 440
Query: 241 gtaagtagatgcttgccaaagagggccctaagagctcatcagcctaggaacccactcctg 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 gtaagtagatgcttgccaaagagggccctaagagctcatcagcctaggaatccactcctg 500
Query: 301 agaagatgtcctttagcctcatttcaccaagtt-gtcatgaggaaaagaaacccttggat 359
||||||||||||||||||||||||| ||| | | ||| |||||||||||||| |||||||
Sbjct: 501 agaagatgtcctttagcctcatttctcca-gatcgtcgtgaggaaaagaaactcttggat 559
Query: 360 gcttcactgaatgaacactggctccaaagtctaacgagacaattttgaaacacacaaaag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gcttcactgaatgaacactggctccaaagtctaacgagacaattttgaaacacacaaaag 619
Query: 420 ctccttttagatcctgctcaatatttcattcatattgctttagataagcataagtaattc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctccttttagatcctgctcaatatttcattcatattgctttagataagcataagtaattc 679
Query: 480 cttatacttgataaaacacatatgcaaattgatttgtagaagtctatagtctttatgatt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cttatacttgataaaacacatatgcaaattgatttgtagaagtctatagtctttatgatt 739
Query: 540 ctattaacttttatttattctgtcttatgcacacttttagtaaatatagggttttttttt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ctattaacttttatttattctgtcttatgcacacttttagtaaatatagggttttttttt 799
Query: 600 taaagttctcccctgctctcttcaaaaccaaagagcctggtttcctcagc 649
|||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 800 taaagttctctcctgctctcttcaaaaccaaagagcctggtttcctcagc 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
