Query= MSMg01no106_d11.b1 MSMg01no106_d11.b1 CHROMAT_FILE:
MSMg01no106_d11.b1 PHD_FILE: MSMg01no106_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:19 2005
(689 letters)
>mm_chr16_40420618_40421708
Length = 1091
Score = 1290 bits (667), Expect = 0.0
Identities = 685/691 (99%), Gaps = 2/691 (0%)
Strand = Plus / Plus
Query: 1 gacagcccatgatgtttgtttcaccctcaaacctatttttcaaatcttacaaatttataa 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 gacagcccatgatgtttgtttcaccctcaaacttatttttcaaatcttacaaatttataa 260
Query: 61 aattt-ttagaaattggtgactggtggacaaacttttctgttttccattcaaatgcagat 119
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatttattagaaattggtgactggtggacaaacttttctgttttccattcaaatgcagat 320
Query: 120 tagatttgaagaattctaacacactattgcatacttcagattgatgacagccagcaaaca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagatttgaagaattctaacacactattgcatacttcagattgatgacagccagcaaaca 380
Query: 180 gatttccagtctattggtagctgttttccttttactttaatatacaggattggcctatat 239
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 gatttccagtctattggtagatgttttccttttactttaacatacaggattggcctatat 440
Query: 240 actcagagttaacttagttctttactatatatagtatcattgagctaaagaagaatgtgt 299
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actcagagttaacatagttctttactatatatagtatcattgagctaaagaagaatgtgt 500
Query: 300 tctagtacagtgggaacagatatgcaaacagaatgtggtatgtaatgagaccacgtgtga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctagtacagtgggaacagatatgcaaacagaatgtggtatgtaatgagaccacgtgtga 560
Query: 360 aaaacagcatgaagctccagtttagaggtttacaataggccacaagggtattttacataa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaacagcatgaagctccagtttagaggtttacaataggccacaagggtattttacataa 620
Query: 420 actgatgttccaagcatccatgttacaataggagagagaatgttatatagagagtaaaga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actgatgttccaagcatccatgttacaataggagagagaatgttatatagagagtaaaga 680
Query: 480 ggatattaagaagagaattggacttttgtacttgctctggattttctaatgtagctcaaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggatattaagaagagaattggacttttgtacttgctctggattttctaatgtagctcaaa 740
Query: 540 gcaactcaaaagtaatgggtgattaatcaagacttagattataggggtctttttt-gcta 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 741 gcaactcaaaagtaatgggtgattaatcaagacttagattataggggtctttttttgcta 800
Query: 599 tattaatgaagcttgaaaatatctcaaggcaaggatttaagcatgaagaatttaatgtcc 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tattaatgaagcttgaaaatatctcaaggcaaggatttaagcatgaagaatttaatgtcc 860
Query: 659 tatcttcattcctgagacactacagaataga 689
|||||||||||||||||||||||||||||||
Sbjct: 861 tatcttcattcctgagacactacagaataga 891
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1091
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1081
Effective search space: 733999
Effective search space used: 733999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_d11.g1 MSMg01no106_d11.g1 CHROMAT_FILE:
MSMg01no106_d11.g1 PHD_FILE: MSMg01no106_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:20 2005
(545 letters)
>mm_chr16_40585386_40586330
Length = 945
Score = 965 bits (499), Expect = 0.0
Identities = 533/547 (97%), Gaps = 6/547 (1%)
Strand = Plus / Minus
Query: 1 ggctatatcctgtgccatcagagtgatat---cctttttttctgaaggggaaaaggttta 57
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 744 ggctatatcctgtgccatcagagtgatataaac---tttttctgaaggggaaaaggttta 688
Query: 58 cagttggataggtcttgtgaattatgaaaacgaagccctgagatgtttgtaagggctttc 117
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 687 cagttggataggtcttgtgaattatggaaacgaagccctgagatgtttgtaagggctttc 628
Query: 118 aacttgtaactatgagatcacatttgagtatagtgaccctaatctgaaatcagagctcaa 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 aacttgtaactatgagatcacatttgagtatagtgaccctaatctgaaatcagagctcaa 568
Query: 178 agatgacttccctttcaacttgatcttctctgacactcacatccagaatgcatcccatgg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 agatgacttccctttcaacttgatcttctctgacactcacatccagaatgcatcccatgg 508
Query: 238 ttatagcagggcagtttgcctggtctatttgtaaccccaagcatcctgttatagtacttg 297
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ctatagcagggcagcttgcctggtctatttgtaaccccaagcatcctgttatagtacttg 448
Query: 298 tggatgccacaaaagctaagcctcttccttatagtgcaaagatctccccagggactaaaa 357
|||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||
Sbjct: 447 tggatgccacaaaagctaagcctcttccttatagtgcaaacagctccccagggacgaaaa 388
Query: 358 cacaaaacccagccacagaggcctcagcagctggaagagaggtttattatcttttgagca 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cacaaaacccagccacagaggcctcagcagctggaagagaggtttattatcttttgagca 328
Query: 418 aatggttgaagtgtaatgtgcagcacctcctcttctctattatcgtcatcactccagtaa 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 327 aatggttgaagtgtaatgtgcagcacctcctcttctctattatcgtcatcactctagtaa 268
Query: 478 actaataggtactgaagaccatatatttgtattgtatctaaactctttgttattctacac 537
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 267 actaataggtactgaagaccatatatttgtattgtatctaaactcttttttattctacac 208
Query: 538 ctaatgt 544
|||||||
Sbjct: 207 ctaatgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
