Query= MSMg01no108_i24.b1 MSMg01no108_i24.b1 CHROMAT_FILE:
MSMg01no108_i24.b1 PHD_FILE: MSMg01no108_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:28 2005
(666 letters)
>mm_chr16_40535761_40536830
Length = 1070
Score = 1145 bits (592), Expect = 0.0
Identities = 647/670 (96%), Gaps = 11/670 (1%)
Strand = Plus / Plus
Query: 5 gaattccttctctgtc----cctaccctgac-cagttattctgatcttccttcactccct 59
|||||||||||| | ||||||||||| |||||||||||||||| ||| |||||||
Sbjct: 204 gaattccttctc---cacaccctaccctgacacagttattctgatctttctttactccct 260
Query: 60 cctcccaatgttcctcttccttacccagaactgaccttgtttcaaccctcctttcgaatg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctcccaatgttcctcttccttacccagaactgaccttgtttcaaccctcctttcgaatg 320
Query: 120 tttagagacaagtgaatacatgacagttctcctcctccacatctttgtatttgttgaatg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttagagacaagtgaatacatgacagttctcctcctccacatctttgtatttgttgaatg 380
Query: 180 actgaatgaatgtccttcaaggtgcagatgaaggtgttcacgcataatgtttaccaatta 239
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgaatgaatgtccttcaaagcgcagatgaaggtgttcacgcataatgtttaccaatta 440
Query: 240 gaaagcaatcgccacagaactgtgtgtcattccccgcta---gaataaataaaggagaat 296
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 gaaagcaatcgccacagaactgtgtgtcattccccgctaccggaataaataaaggagaat 500
Query: 297 tgtcaagttgacttctttatcctattccttgggaaattttgctaacagtggatttttagt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtcaagttgacttctttatcctattccttgggaaattttgctaacagtggatttttagt 560
Query: 357 gaagcaatagagcaaatttgagggactgagggaaaaaaatcagatttacagaattaaaag 416
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct: 561 gaagcaatagagcaaatttgagggactgaggaaaaaaaatcagatttacagaattaagag 620
Query: 417 caaacggtcgctgttgttcctagtgtttgccatttatggtgtctgagcagtttcccgagg 476
|||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 621 caaacggttgctgttgttcctagtgtttgccatttatggtatatgagcagtttcccgagc 680
Query: 477 cctgcaagaacacactttgttttatcctttggaaatgaggaaagatgtgatagaagggaa 536
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cctgcaagaacacactttgttatatcctttggaaatgaggaaagatgtgatagaagggaa 740
Query: 537 gagttcagagggaagatcattcttggaaatacttggaaaaattctcagttattattgggg 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gagttcagagggaagatcattcttggaaatacttggaaaaattctcagttattattgggg 800
Query: 597 aagctaaaatccccagctgcccagtgagccagcacatgggttactaaaggccacactgtt 656
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aagctaaaatacccagctgcccagtgagccagcacatgggttactaaaggccacactgtt 860
Query: 657 tccgtgctgg 666
||||||||||
Sbjct: 861 tccgtgctgg 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1070
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1060
Effective search space: 695360
Effective search space used: 695360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_i24.g1 MSMg01no108_i24.g1 CHROMAT_FILE:
MSMg01no108_i24.g1 PHD_FILE: MSMg01no108_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:28 2005
(577 letters)
>mm_chr16_40642354_40643330
Length = 977
Score = 1048 bits (542), Expect = 0.0
Identities = 569/578 (98%), Gaps = 2/578 (0%)
Strand = Plus / Minus
Query: 1 catgcccataattattatctgggtctgtttgagttgttcctatatttagggactacaaag 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 659 catgcccataattattatctgggtatgtttgagttgttcctatatttagggactacaaag 600
Query: 61 acaataagggttaattaatgttttaacaagctattctatggatataagaattcatctatt 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 599 acaataagggttaattaatgttttaacaagctattctatggatgtaagaattcatctatt 540
Query: 121 ttactgatctgttagtacatatgtcattagagatatatagcacacatacataggtcacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ttactgatctgttagtacatatgtcattagagatatatagcacacatacataggtcacta 480
Query: 181 tatagaaggaggttgatggcatacttgaggg-aaaatcattaaatttttttaaaatttcc 239
||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||
Sbjct: 479 tatagaaggaggttgatggcatacttgagggaaaaatcattaattttttttttaatttcc 420
Query: 240 catctatccagttcatatcatgggaagatgtcttggatactgattcctgtactgattgtt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 catctatccagttcatatcatgggaagatgtcttggatactgattcctgtactgattgtt 360
Query: 300 gttattcttgccttttcttttctttcttttttttattttaaaaggtagttttattaaagg 359
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 359 gttattcttgccttttcttttctttc-tttttttattttaaaaggtagttttattaaagg 301
Query: 360 attttaagaagacagtttttctctttaatcttcattgcagataagtttagttatgagtgt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 attttaagaagacagtttttctctttaatcttcattgcagataagtttagttatgagtgt 241
Query: 420 gattgtccagctgagggttgatgtgggggcgtagatttactctttttttaaaataatttt 479
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 240 gattgtccagctgagggttgatgtgggggcgtagatttactcttttttaaaaataatttt 181
Query: 480 tattaggtattttcctcatttacatttccaatgctatcccaaaagtcccccataccctcc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tattaggtattttcctcatttacatttccaatgctatcccaaaagtcccccataccctcc 121
Query: 540 acccactccgctacccacccattcccactttttggccc 577
||||||||||||||||||||| ||||||||||||||||
Sbjct: 120 acccactccgctacccacccactcccactttttggccc 83
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
