BAC Information

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BAC

Clone NameMSMg01-109H18
Chromosome16 (Build37)
Map Location 8,207,738 - 8,208,167
singlet/doubletsinglet
Overlap genenone
Upstream geneA2bp1
Downstream gene4930511J11Rik, BC024814, Abat, LOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7, LOC665231, 1810013L24Rik, LOC100043106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109H18.T7 (MSMg01no109_h18.b1)MSMg01-109H18.TJ (MSMg01no109_h18.g1)
ACCAG322658AG322659
length727731
length of high quality
(start - end)
---520 (83 - 602)
definitionCHROMAT_FILE: MSMg01no109_h18.b1 PHD_FILE: MSMg01no109_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:44 2005CHROMAT_FILE: MSMg01no109_h18.g1 PHD_FILE: MSMg01no109_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:12:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGGNCGATCTATAATTGGGCGCTAATCGAGGANTTTTCAATAGAGGGC
GGATTCTTTAGTTTTCCAAAATAGAGATGGGGAACTGTGTTTGTGGAGTA
GAACACCTAGAACCTCACCTGCTAAGTGGTTCTCCCACAATGTCAGCCAT
TCCGATATGTTAGAATGTAGTGGATACATGGGTGAGCTTTATCGCTAAAT
GCTTCACCCTCCGCGCCGATATGTATCACCGTATATGTCCATTTAGTTTT
CCCACTTTTTTCCCGTTTTACTCCCGCCTTGTCTCCTGCCTCCTCGCCGA
ATTCCTCCCCTCAGATGCCCTCTTTTTCGTTATGATCAGAATTATACCAC
ATAAAACCTTTTTTTTTTGCCCCCCCCCCTAACAATCGTTATCTAACTCC
CCCTCTTAACCTTCCTTTTATATATACCAACCCACCCTTTAGTCCGTTCC
CCTTTTCCTTCTACCCCATTTTCCCCTCTTTCCCCCTTTTCCCCTCTTTA
CCATATCCTTTTTTTTATGTACCCTTCCTCCCCCTTTCCTTCCTTACATT
GCTCGTCCCCCCTTTTTACCCTTTCCCCCCCCCACCCCTTTCCCTTTACT
CCCCCTTATCCCCTTCCTTTCCCTTCCACTACCCCCCCTTTCCTTTTCCA
ACTTTCTTTTTTTCCCTTTTCTTTCCCTTATTCCGCTCCCCCTCCTTCCT
CTTATCCCCCCCCCCTATCCTTACCCG
TTTATGNTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTAGTCAAAAGTTATT
CCTCTGGGCATTAACTGCCACCCTAAGCCCAATCCTTTTGGCACAGCTAC
AAATCCTAAACTCTCACAAATGGCATCCCCTTATCCTTATGCTTCTTTCT
TTCTGTGTCTCCATGACAGCAGGACACACTTGCTTTCTTCTTCCTGGCTG
GTTACATTCTGTGTCCTTTGGTTCTTTTATAATACAAGGTCTCGCTATGT
GACCCTGGCTAGCCTGGAATTTTCTATGTATGCCAGGCTGGCTTTGAAGT
GTGGCAGGTCTCCCATCTCTGCACTGGGTTCAGGTATCCACCAACATACC
TATATCTTCCAGGCTATTTGGCTGACGTCTTGCCTACTCCTCAGCATAAA
AATATTGTTTTCTTAGCCATCAGCCCATGTCCTAATTTCTGCTAGCTCTT
TCCTTTCTACTGAGACACTTCCATCACTTCCTGGGGTAGAGACAATTGGC
TTTCCTTCAGGTAGCCATGTCTCTCTTTTCTTTCACAAAATCCCATGTAG
TTTAAGTGTCCTCTAGGCCGAGATATGTTCAGGAAAAGTGGCAGACTAAC
TCTTTCCCTTGTAGGATAATGGCTCATGATATGAGTGAACCAGTCACAGT
AATTGAATGACTCCTTGTTTTTGATGACTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_h18.g1 MSMg01no109_h18.g1 CHROMAT_FILE:
MSMg01no109_h18.g1 PHD_FILE: MSMg01no109_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:44 2005
         (520 letters)



>mm_chr16_8207248_8208167
          Length = 920

 Score =  787 bits (407), Expect = 0.0
 Identities = 425/431 (98%), Gaps = 2/431 (0%)
 Strand = Plus / Minus

                                                                       
Query: 91  gcatccccttatccttatgcttctttctttctgtgtctccatgacagcaggacacacttg 150
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 gcatccccttatccttatgcttctttctttctgtgtctccatgacagcaggacacacttg 861

                                                                       
Query: 151 ctttcttcttcctggctggttacattctgtgtcctttggttcttttataatacaaggtct 210
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 ctttcttcttcctggctggttacattctgtgtcctttggttcttttataatacaaggtct 801

                                                                       
Query: 211 cgctatgtgaccctggctagcctggaattttctatgtatgccaggctggctttgaagtgt 270
           | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 800 cactatgtgaccctggctagcctggaattttctatgtaggccaggctggctttgaagtgt 741

                                                                       
Query: 271 ggcaggtctcccatctctgcactgggttcaggtatccaccaacatacctatatcttccag 330
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ggcaggtctcccatctctgcactgggttcaggtatccaccaacatacctatatcttccag 681

                                                                       
Query: 331 gctatttggctgacgtcttgcctactcctcagcataaaaatattgttttcttagccatca 390
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gctatttggctgatgtcttgcctactcctcagcataaaaatattgttttcttagccatca 621

                                                                       
Query: 391 gcccatgtcctaatttctgctag-ctctttcctttctactgagacacttccatcacttcc 449
           ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 620 gcccatgtcctaatttctgct-gcctctttcctttctactgagacacttccatcacttcc 562

                                                                       
Query: 450 tggggtagagacaattggctttccttcaggtagccatgtctctcttttctttcacaaaat 509
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 tggggtagagacaattggctttccttcaggtagcaatgtctctcttttctttcacaaaat 502

                      
Query: 510 cccatgtagtt 520
           |||||||||||
Sbjct: 501 cccatgtagtt 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)