BAC Information

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BAC

Clone NameMSMg01-112K02
Chromosome16 (Build37)
Map Location 70,654,871 - 70,655,318
singlet/doubletsinglet
Overlap genenone
Upstream geneSpeer2, EG664930, Gbe1, D16Ertd519e
Downstream geneLOC100039231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112K02.T7 (MSMg01no112_k02.b1)MSMg01-112K02.TJ (MSMg01no112_k02.g1)
ACCAG324990AG324991
length1,543735
length of high quality
(start - end)
---452 (77 - 528)
definitionCHROMAT_FILE: MSMg01no112_k02.b1 PHD_FILE: MSMg01no112_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:50 2005CHROMAT_FILE: MSMg01no112_k02.g1 PHD_FILE: MSMg01no112_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCGGTTGTGTATCATCTGTGGTATCGAGCTACAGGCGGATAAGACTTGTA
GTGCGGGCTAATAATGAACCATCGCAGAANTATTACACTCGCGCAANATC
TCCGCGAGTAATCGTGACGACGGTACAACATACTATTGACCTGCTAATAT
CGACACATGAGAGATGACGAGATAATCTAGCAGACGACATNTAGTTTAAT
ACGAGACGGCGACCTGACTCCGCGAAGATATATAAACTAAAAGAGCGAGC
AAACCGCATCCGAAATTATGCCTCTCTATAACATCTGTATAGTCTATATG
CGCGGGCCGTGGTAAACGACACGCTGCTCATCGTACGCGCGCGCGGCGCG
CGACATAATCGGCGTATGATATCAGTAACTATCATCGCGCGGATATAACA
CGTTCTTGTTCAACGTATTCGTGATGATACAGACACGATATCATCAAATA
CGCGACATATACGTCGGTCACTCTGAGTCTGTACTCTGATAACAATTCGG
TCTGCTAGTCNGANATCGGACACAGACTCAAGTCTGTCGCTATATAAGAC
TCCGTTCTGATCGTGAATCATATTGCTGCGCTACGGTGCGCGATGTCTTA
TCACTACGCGTATGTTCAACTNCACATTGCTCGCGAACGATACCTCACAC
ATATATCACCATCTATACTCTCTCGCGTTCGCGCGCGGCGTGCGATGTAT
TCGCGCGCAGATTCCGCTATATACTTCCACTATATCGCCGCCGCGATTCG
TGTACGTAACACGCGGTGCGCGTATCGCGAGCGTATTTAACGCTAGCATA
CATCATTATACAGCGCATGGCCGATTGTGGGTATGCTCCTCGTCCCGTAT
ACGCCGTAATAAGAGTATATACTATCTTAAAGAGTACAAGAGCAGGCGAA
TATCAATACCACTCGTNTACAGTGCGTAATAATGTATAGGCTATGCGTTA
CACACGAGGTGCGCGGAGCGGACGCGGCTAGATTTCGCCTATTATACCAT
ATTATCTGTTATTAATGTGACCACGCCGCTGTACGCCATTCGTTACACTC
GCTGCANTGTNATACACACGCGGCGAGTAGGATTGACACGACGATATAAA
TGAGCATAGTATCGCGTGAANACATAGAGATACCGCGCTCCTTGNTATTC
TATTCTGGGATTGAGCGCGCGANAAATCCGCTCGGCGCGCGCGCGTTCGT
CACGTTCGCTAATAATATTGAAGGATATCGCGCGGGTATATACTAGGTAC
ACGATCAAACGCGACAAAATGATTNATGGGCCGGATATAATACTCGGCGC
GCGCGACTCTCTTACCACCACGCTAGTACTCGCCGACGCATATGATATGT
ATTTCACGTACAGTTCGCACGCCTGCTGATCGCGACGCAGCGCATATANA
NGAGATCTAAATAGAAGATAGAGCACGCGAAGACGACCGGTGCGGTGTAT
CGTCNATCCGATATCCGCGCACACACGTGCGCGTATATACCGCGCACGGT
GAACGTGTNTAAATCGCGGCTAATATACAGAGTCACATGAGCN
CAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGCCAGCTCTAAAATTTGCTAAA
GTTTGCCATCTAGAGGTCTAGGGGAGTATATTTTGGAAAGTACTTTCAGA
TTGATTTTTCTCTAAAATACAGATTATTTTTGTTTATTAAATAAAATGGA
GGCTCGGGAAAAAGGGATATTCCACTTATTGCTGACTGCACACAGGGCAC
TTTACAATTTTGGGCATTTACTTCTAAGTGCTGGCAAGGTTGCTTCGAGT
TTTATGTGGACAGCCAGCCATTTTGACTGTGACATCCTCAGAGGTCTTTT
AGGCAAGCTGGTTTACAAATTTCTCCACACTGTATGAGAGACAGAAAAAC
AATACATTAGAGACTGGTAAATGTACCATGGCGTTTTTAATGATTAACAA
TCTTTTGACTATTAAGACTGACAGTCAGGGTTATTTGTACTCCTGTTGAG
TACTGCAGATGTTCATGTTAAACAATTGTCGGGCGGTAGGAAGCAAACTA
TCCTGGTGAAGAAAGAAAAAGGTTCCCATCTAAAACGAGTGCTGACATCC
TATTTCACACTTTGCACAAACATGCATGTGAGCCCACCCATATAAACACA
CACACTCACATACACACCTGCCATCATACCCTACTCTTACACTCCCCCTT
TTCCACCCTTCCCCTGTGCGTGTGCTTTATGCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_k02.g1 MSMg01no112_k02.g1 CHROMAT_FILE:
MSMg01no112_k02.g1 PHD_FILE: MSMg01no112_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:50 2005
         (452 letters)



>mm_chr16_70654671_70655518
          Length = 848

 Score =  816 bits (422), Expect = 0.0
 Identities = 443/452 (98%), Gaps = 4/452 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggccagctctaaaatttgctaaagtttgccatctagaggtctaggggagtatattttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggccagctctaaaatttgctaaagtttgccatctagaggtctaggggagtatattttgg 260

                                                                       
Query: 61  aaagtactttcagattgatttttctctaaaatacagattatttttgtttattaaataaaa 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 aaagtactttcagattgatttttctctaaagtacagattatttttgtttattaaataaaa 320

                                                                       
Query: 121 tggaggctcgggaaaaagggatattccacttattgctgactgcacacagggcactttaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggaggctcgggaaaaagggatattccacttattgctgactgcacacagggcactttaca 380

                                                                       
Query: 181 attttgggcatttacttctaagtgctggcaaggttgcttcgagttttatgtggacagcca 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 attttgggcatttacttctaagtgctggcaaggttgctttgagttttatgtggacagcca 440

                                                                       
Query: 241 gccattttgactgtgacatcctcagaggtcttttaggcaagctggtttacaaatttctcc 300
               |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 ----ttttgactgtgacatcttcagaggtcttttaggcaggctggtttacaaatttctcc 496

                                                                       
Query: 301 acactgtatgagagacagaaaaacaatacattagagactggtaaatgtaccatggcgttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 497 acactgtatgagagacagaaaaacaatacattagagactggtaaatgtaccatggtgttt 556

                                                                       
Query: 361 ttaatgattaacaatcttttgactattaagactgacagtcagggttatttgtactcctgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttaatgattaacaatcttttgactattaagactgacagtcagggttatttgtactcctgt 616

                                           
Query: 421 tgagtactgcagatgttcatgttaaacaattg 452
           ||||||||||||||||||||||||||||||||
Sbjct: 617 tgagtactgcagatgttcatgttaaacaattg 648


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 848
Length adjustment: 10
Effective length of query: 442
Effective length of database: 838
Effective search space:   370396
Effective search space used:   370396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)