BAC Information

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BAC

Clone NameMSMg01-112L20
Chromosome16 (Build37)
Map Location 14,142,511 - 14,143,022
singlet/doubletsinglet
Overlap gene4921513D23Rik
Upstream geneErcc4, Gt4-1, Mkl2, Parn, LOC100043196, 3110001I22Rik, Pla2g10, A930007A09Rik, LOC622757, Rrn3, Ntan1, Pdxdc1, Mpv17l, Ifitm7, 2900011O08Rik
Downstream geneNde1, Myh11, 0610037P05Rik, Abcc1, Gm1758, Snai2, Efcab1, LOC100042737
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112L20.T7 (MSMg01no112_l20.b1)MSMg01-112L20.TJ (MSMg01no112_l20.g1)
ACCAG325071AG325072
length748764
length of high quality
(start - end)
516 (46 - 561)201 (74 - 274)
definitionCHROMAT_FILE: MSMg01no112_l20.b1 PHD_FILE: MSMg01no112_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:59 2005CHROMAT_FILE: MSMg01no112_l20.g1 PHD_FILE: MSMg01no112_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:17:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTATGTTTTGGCGTAAAGGACACGATGATCCTGTTGCCAAAGAC
ATCTTCATTTTCCATTCGCTTCTGGGCCCGCTCTGCACTGTCCTGGTTTA
TGAAGCGGAGAATTGCGCTGCAGCCTGTGATACTCAGCACCTTGCCACCA
CAGTTATCAGAGAGGCGCCTGAGCCTGTTGCTGATGCTCTTGCCATCTTT
ATTTGCTGGCAGGTTATAAACATAGAGTAGAGTGTGGCACTGCAAGCATG
GGAAAAAAGTGTTATATCAGGTTCAGTCAAAAGTATACATTCAATTTCAA
AACAAGAACAAGTCATGTCTCCACTTCAGCTGATACACAAGAGGAAAGAA
CAGCAACATTACAACTATTCAGTGTAATGCTGCTTCCAATAATCAGCTAG
GCACAGCTATAGTGAGTAATTCCGTTTCTATACAATGTCCAGAAAAGGTC
AACCTAGAGACTGGTGACTAGCTGCCTGGGGAGGAGGGATCACCACTGAC
GGCAGATATCATATGGAAACCATTTTAAATTGAAGGTACAACACAGTAAA
TATTACAAGACATTGAAATATACTTGTTAGCCAATAGCCTGTTACTTCCC
TGGGTAGAACCCTTCCAGATAATCTGTAATGTATGCACCACGAAATAATA
CAGTGCAAACACTAACACAATGAAGATAATTGTGCAGAGACTAATACG
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAGACCTGCTGAACCCACAGAAAAGCT
AGGAGCTCAACGTGGCCTGCTTATAATCCCATCATTCACTGGGTAGAGGC
AGGGAATCCCCAGACTAGTTAATCTAGTTGAATTTCTTTGCTCTGGGCTC
AGTGAGAGAGCCCTCCTAAAGAATAAAGGGTATGTGTGTTGGGATGGGGG
TGAGTGAGAAAGACTTGATGAAAACATCAGGTCTCTACATGCACACACAC
TCATACATACACACACACACTTCTATATTTAGGAGAGCACACGTGTGCAC
TATATAGATGCAAAGAGAGATAAACAGGGTGACTTTTTTCCAGAATAATC
TTTTTTCTTGATACACTGCCCCCTAACCTTCTTTCCCGCAGTACATCTAT
CTCTTCTCCTCATCTCCTAGCTATCACCCCACGCTCAGATTACAACAAAG
TCCACTCTGGGGCAAACAATTGAATTTCTTGCGATTTTCTTTTATTTCCT
TATTGACGATATCGTTTGCGTGTATGGCACCATGGCCTTCCTTCTCTCTT
CCCTGTTCTCTTTAGTCATGCTTTTTCCCTTACTGTATTATAATCCTTCC
CCCCCTTATCTCCCTCTTGTTCCATTCTGCCCCCCCCCCGTTTTTTTTTT
CCCTCCCTCCTTTTTTATTTCGCCTCACCCTCTTTTTTTTTCGTACTCAC
CTTTTCTCCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_l20.b1 MSMg01no112_l20.b1 CHROMAT_FILE:
MSMg01no112_l20.b1 PHD_FILE: MSMg01no112_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:59 2005
         (516 letters)



>mm_chr16_14142307_14143222
          Length = 916

 Score =  944 bits (488), Expect = 0.0
 Identities = 506/512 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctatgttttggcgtaaaggacacgatgatcctgttgccaaagacatcttcatt 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctatgttttggagtaaaggacacgatgatcctgttgccaaagacatcttcatt 264

                                                                       
Query: 65  ttccattcgcttctgggcccgctctgcactgtcctggtttatgaagcggagaattgcgct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttccattcgcttctgggcccgctctgcactgtcctggtttatgaagcggagaattgcgct 324

                                                                       
Query: 125 gcagcctgtgatactcagcaccttgccaccacagttatcagagaggcgcctgagcctgtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcagcctgtgatactcagcaccttgccaccacagttatcagagaggcgcctgagcctgtt 384

                                                                       
Query: 185 gctgatgctcttgccatctttatttgctggcaggttataaacatagagtagagtgtggca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gctgatgctcttgccatctttatttgctggcaggttataaacatagagtagagtgtggca 444

                                                                       
Query: 245 ctgcaagcatgggaaaaaagtgttatatcaggttcagtcaaaagtatacattcaatttca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgcaagcatgggaaaaaagtgttatatcaggttcagtcaaaagtatacattcaatttca 504

                                                                       
Query: 305 aaacaagaacaagtcatgtctccacttcagctgatacacaagaggaaagaacagcaacat 364
           || |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 505 aagcaagaacaagtcatgtctgcacttcagctgagacacaagaggaaagaacagcaacat 564

                                                                       
Query: 365 tacaactattcagtgtaatgctgcttccaataatcagctaggcacagctatagtgagtaa 424
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 565 tacaactattcagtgtaatgctgcttccaataatcggctaggcacagctatagtgagtaa 624

                                                                       
Query: 425 ttccgtttctatacaatgtccagaaaaggtcaacctagagactggtgactagctgcctgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttccgtttctatacaatgtccagaaaaggtcaacctagagactggtgactagctgcctgg 684

                                           
Query: 485 ggaggagggatcaccactgacggcagatatca 516
           ||||||||||||||||||||||||||| ||||
Sbjct: 685 ggaggagggatcaccactgacggcagacatca 716


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)