BAC Information

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BAC

Clone NameMSMg01-113O24
Chromosome16 (Build37)
Map Location 56,235,849 - 56,236,120
singlet/doubletsinglet
Overlap geneImpg2
Upstream geneZpld1, Nfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7
Downstream geneLOC672835, Abi3bp, Tfg, Gpr128, Tmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113O24.T7 (MSMg01no113_o24.b1)MSMg01-113O24.TJ (MSMg01no113_o24.g1)
ACCAG325944AG325945
length694685
length of high quality
(start - end)
598 (49 - 646)274 (100 - 373)
definitionCHROMAT_FILE: MSMg01no113_o24.b1 PHD_FILE: MSMg01no113_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:31 2005CHROMAT_FILE: MSMg01no113_o24.g1 PHD_FILE: MSMg01no113_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCACCTGAGGAATACCGAATGACTGAGAAGCACCTGAAAAAA
TGCTCAGCATCCTCAATCATCAGAGAAATGCAAATCAAAACAACCCTGAG
ATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACA
GTAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGG
TGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCT
TAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGG
GCATATATCCAGAAGATGTCCCAACTGGTAAGAAGGACACATGCTCCACT
ATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAG
ATGCCCCTAAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAA
TGGATTACTACTCAGCTATTAAAAGAATGAATTTATGAAATTCCTAGCCA
AATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCGCGA
AGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAAC
CTAGGATACCCAAGATATACGATGCCATTTGCTAAACACATGAA
TATTTCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCTTTTCCATGGTGGGTGGT
TGGGACTCAAACTCAGGCACTCATGCTTGCATGGTAGGGGCATTATTGAC
TGAGCCGTTTTAATAGCCCCTTGAATTCTTTGTTTTTGAACTAAGAAGAT
CTGCAGTGAACCAAGATTTTAAAAAGCACTACTCCCCTGATTTTGTGAAA
TGCAGTTAAAGGAGAAGTCTCTATGGCCCCTAATATTTCTATGTTCTTGT
GTCAGCCCCAAACTCATCCATCTGGTAAGCCACCCTTGGGATTATTATGG
ATTAAATATTAACTTTTGTTTTAATACATATTTCAATATAATTAGATTAT
TTTTAAATCCCCAGTCTGGCATTCTGTCTCTCTATCCAGTCACTGAGCTC
CTGACGGAAAGATGGGGCAGACTTTTTAAAGGGCTTGGCATTTAAACCCA
CGCTTTCATAAAATGGGAACGCTTATAAATTGGAATCTTTTAACCAGCGG
GAGTTATTCTGGGCCCCTGGCCTCTTAAACTTTGGGGCCTTGGAAAAATT
TTTTTTTTCTTTTTTTTATTTGGGAAAGCTAAAAAGTGGATCCCCAATAT
CTCCTAGGGGAAGGGGCAAAATATTGTCGACACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_o24.g1 MSMg01no113_o24.g1 CHROMAT_FILE:
MSMg01no113_o24.g1 PHD_FILE: MSMg01no113_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:31 2005
         (274 letters)



>mm_chr16_56235649_56236322
          Length = 674

 Score =  518 bits (268), Expect = e-151
 Identities = 271/272 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgggactcaaactcaggcactcatgcttgcatggtaggggcattattgactgagccgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgggactcaaactcaggcactcatgcttgcatggtaggggcattattgactgagccgtt 260

                                                                       
Query: 61  ttaatagccccttgaattctttgtttttgaactaagaagatctgcagtgaaccaagattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaatagccccttgaattctttgtttttgaactaagaagatctgcagtgaaccaagattt 320

                                                                       
Query: 121 taaaaagcactactcccctgattttgtgaaatgcagttaaaggagaagtctctatggccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaaagcactactcccctgattttgtgaaatgcagttaaaggagaagtctctatggccc 380

                                                                       
Query: 181 ctaatatttctatgttcttgtgtcagccccaaactcatccatctggtaagccacccttgg 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 ctaatatttctatgttcttgtgtcagccccaaactcatccacctggtaagccacccttgg 440

                                           
Query: 241 gattattatggattaaatattaacttttgttt 272
           ||||||||||||||||||||||||||||||||
Sbjct: 441 gattattatggattaaatattaacttttgttt 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)