BAC Information

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BAC

Clone NameMSMg01-113P16
Chromosome16 (Build37)
Map Location 8,613,391 - 8,613,628
singlet/doubletsinglet
Overlap geneAbat
Upstream gene4930511J11Rik, BC024814
Downstream geneLOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7, LOC665231, 1810013L24Rik, LOC100043106, Grin2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113P16.T7 (MSMg01no113_p16.b1)MSMg01-113P16.TJ (MSMg01no113_p16.g1)
ACCAG325974AG325975
length707737
length of high quality
(start - end)
238 (70 - 307)204 (67 - 270)
definitionCHROMAT_FILE: MSMg01no113_p16.b1 PHD_FILE: MSMg01no113_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:34 2005CHROMAT_FILE: MSMg01no113_p16.g1 PHD_FILE: MSMg01no113_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATTTGCGGCGCTATACGACTCCTATTTCCAGAAAGGGGCGGAATTCCT
GGAGCTTCCTGAATGGCTCATGTTCCCTGCAGCGAGACTGAGAAGCAGCT
TCCCAAGATCAGCCTTTGTGGATGCTGCCAGGTGGCCTGGGACCATGGGT
CCCAGGTGCCAGCAGCAGGATTGGATTGCCTCCATTGTCAGGAGAGGAAA
CGCCTCCCTAGCATAAACCAGAGACATGACGAGCCAAGGTGGTCATTGCC
AGAAGTTTACAGCTTCTAGCTCTTCATGGACACAGTGCAAGACACAGTGC
CAGTTGAACCTAGTGTTGCCATAGAAGCCAGTGGTAGGTTCAGAAGAGCT
TCTTGAGACCTCCCAGTGCATGCAGCCTGTGGGGACTCTATCTCCAGTGC
TCATCTCCAGCAGAGATAACAGGTACACTCCCAGGACTGGTATCACTGTT
TATTAACACATATACACTTTTTTTTTGGATCGGAGGTAAGGGGACAGTCG
GAAACTTACAAAATCACCGCACTGAATTCCTCAAATGGGAAACTGACTAA
ACACCACTCACTTAAAGGTTGCCGGGGAGCGGAATCTCTCTCCTGAAGAG
CGGAAGGCCCCCATAAAGCTCCGCCGAATCCGAATCAAAAATTCCCGTGG
TTGTAATCTAATTGATAAGCCAGGAAGTGCGGTCTAAGTGACCGTAGAAG
ATCCTGC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCACACTGCCAAAAACCGGAGGAAGAGGAGGAGGG
AGAGAAAGCTGGAGGCTGGGCAGGGTGGCACACATACTTTCAGCCGCAAC
TTTCAGGAAGCAGAGAAAGGTCGATCTCCATGAAGTTGAGGCTATCTAGG
AGCCAAGGCTATCTAGGGAGACCTTTTTTTGAGAGGGAGGGAGGGAGAGA
GAGAGAGAGTGGTTGAGGCTTAAGGACCAAGGTGGGTCCTTAGCTCTGCT
CTTCATCAGTCTCTTCTACTTTGCTTCTGTTCACCTTTTTCTCACGAAAA
CATTTAAAGCGTGTCCGCCGCCAAGTGTGAGACCATCTAGAACTAGTTGC
TATGATATGCCCCCACCTTTCCCGACCGACATTACCAATTGTGTTCCAGT
CCGATTCCGCACCGACAATTCGTGCCCTTCAGGATCGCAATCGTTGAGGG
ACCAACCCACGTTAGAAAATCAAAACTGCTACCCACGACTTCTGTCCGTG
TTATAGAGGCCCGGTATTCTTTTTACCTTCTCGGGTACCTGTCATGGCCC
CTTACGTCGTACCCTTTTGCGCTCCGAACATTTACGCTGTCCGCTCCTTC
CCTCAGTTATTATACTCCAATGGCCCTCTTTTTTTTACACCCCACGGCCC
TGACAAATAGAAGAACTTATCGCGCTCCCCTATATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_p16.b1 MSMg01no113_p16.b1 CHROMAT_FILE:
MSMg01no113_p16.b1 PHD_FILE: MSMg01no113_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:34 2005
         (238 letters)



>mm_chr16_8613191_8613828
          Length = 638

 Score =  445 bits (230), Expect = e-129
 Identities = 236/238 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgttccctgcagcgagactgagaagcagcttcccaagatcagcctttgtggatgctgcc 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgttccctgcagtgagactgagaagcagcttcccaagatcagcctttgtggatgctgcc 260

                                                                       
Query: 61  aggtggcctgggaccatgggtcccaggtgccagcagcaggattggattgcctccattgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtggcctgggaccatgggtcccaggtgccagcagcaggattggattgcctccattgtc 320

                                                                       
Query: 121 aggagaggaaacgcctccctagcataaaccagagacatgacgagccaaggtggtcattgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 aggagaggaaacgcctccctagcataaaccagagacatgacgagccaaggtggccattgc 380

                                                                     
Query: 181 cagaagtttacagcttctagctcttcatggacacagtgcaagacacagtgccagttga 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaagtttacagcttctagctcttcatggacacagtgcaagacacagtgccagttga 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)