Query= MSMg01no114_h02.b1 MSMg01no114_h02.b1 CHROMAT_FILE:
MSMg01no114_h02.b1 PHD_FILE: MSMg01no114_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:08 2005
(618 letters)
>mm_chr16_80721773_80722791
Length = 1019
Score = 955 bits (494), Expect = 0.0
Identities = 571/598 (95%), Gaps = 8/598 (1%)
Strand = Plus / Minus
Query: 9 tctttcagac-caaggacaggttgtgaatatataaacttacaacactgggagaatgaaaa 67
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tctttcagacacaaggacaggttgtgaatatataaacttacaacactgggagaatgaaaa 579
Query: 68 gaatccatgtgtgtttaagccaggcagggtctccagattacaaggaaggcttagccaggg 127
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 578 gagcccatgtgtgtttaagccacacagggtctccagattacaaggaaggcttagccaggg 519
Query: 128 gctcccaatgctctcagggtccaaatgctctacagttcctttcttaagtacaaactcaga 187
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 518 gctcccaacgctctcagggtccaaatgctctacagttcctttcttaagtacaaacccaga 459
Query: 188 ctctgctatgaatccatgattagagaaaactgcagtcatgaggtaaagcctggagtcagt 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ctctgctatgaatccatgattagagaaaactgcagtcatgaggtaaagcctggagtcagt 399
Query: 248 caagatgctgttcaataaagctatgcttacactgatatgagtgttgattagctaatatat 307
||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||
Sbjct: 398 caagatgctgttcaataaaaatatgcttacactgatatgagtgttgaatagctaaaatat 339
Query: 308 atatataaacagaagtgggaaaaaataaaactgttcatattcatgttatagtcttatttc 367
|||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 338 atatgtaaacagaagtaggaaaaaataaaactgttcatgttcatgttatagtcttatttc 279
Query: 368 tctgcccatcaattcccttcattctaggttcctgtaacgcctacatctggactgacaccc 427
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 278 tctgcccatcaattcccttcattctaggttcctgtaatgcctacagctggactgacaccc 219
Query: 428 taagtaagagcaattgatacctactggcaaagaaaacccagttttctccagtgaagtctc 487
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 taattaagagcaattgatacctactggcaaagaaaacccagttttctccagtgaagtctc 159
Query: 488 acatgatgtattaactacatccatgccagtactcaggttgtgtttgtaaac--tttttgt 545
||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 158 acatgatgtattaaccacatccatgccagtactcaggttatgtttgtaaacgttttttgt 99
Query: 546 ctcactttgctttatttgggcataatttacctctttct--tctttgactt-tttttgt 600
|||||||||||||||||| ||||||||||||| ||| | |||||||||| |||||||
Sbjct: 98 ctcactttgctttatttgagcataatttacct-ttt-tggtctttgacttgtttttgt 43
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1019
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1009
Effective search space: 613472
Effective search space used: 613472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no114_h02.g1 MSMg01no114_h02.g1 CHROMAT_FILE:
MSMg01no114_h02.g1 PHD_FILE: MSMg01no114_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:08 2005
(569 letters)
>mm_chr16_80664547_80665512
Length = 966
Score = 1000 bits (517), Expect = 0.0
Identities = 555/569 (97%), Gaps = 3/569 (0%)
Strand = Plus / Plus
Query: 1 tcagtcacagttcatcctgtttatcaatttaattaatagagaattttgactttatagtag 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 tcagtcacagttcatcctgtttatcaatttaatcaatagagaattttgactttatagtag 260
Query: 61 tcaaagccatgattaatttccctgacccctcgttatctttgaaaccattaagtggaattg 120
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 261 tcaaagccatgattaatttccctgacccctcgttatctttgaaaccactaaatggaattg 320
Query: 121 aacattgacattgaagtaattataatgctcttgttattgttataaaaacaaaatacatgt 180
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 aacattgacattgaaataattataatgctcttg---ttgttataaaaacaaaatacatgt 377
Query: 181 attcctagagtgtatttaaaaagatttttgagcaaaatcggatatcatcttatatttatg 240
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atccctagagtatatttaaaaagatttttgagcaaaatcggatatcatcttatatttatg 437
Query: 241 tcagataaactttaacatttctaccacaattaatagatttgtgttgactaaatattttat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tcagataaactttaacatttctaccacaattaatagatttgtgttgactaaatattttat 497
Query: 301 tgctattttacataatgcattcttcaaaggtaataattcatcagcctatctgaccaatta 360
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 498 tgctattttacataatgcattcttcaaaggtaatatttcatcagcctgtctgaccaatta 557
Query: 361 atgtctgctgtcactcattttctgtgactacttactagggagcatagttcctgcaggcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 atgtctgctgtcactcattttctgtgactacttactagggagcatagttcctgcaggcaa 617
Query: 421 atgatcaaacgattcagctattaggaaacaatgcaaaattaatggacacctgtataaagc 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 618 atgatcaaacgattcagctattaggaaacaatgtaaaattaatggacacctgtataaagc 677
Query: 481 atcatacttacaaagaaatatgaaggaaatttcccataaaatcattctgatttaaaaatg 540
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 atcatacttacacagaaatatgaaggaaatttcccataaaatcattctgatttaaaaatg 737
Query: 541 acacaaaataataattttatagaatcaat 569
| |||||||||||||||||||||||||||
Sbjct: 738 aaacaaaataataattttatagaatcaat 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 966
Length adjustment: 10
Effective length of query: 559
Effective length of database: 956
Effective search space: 534404
Effective search space used: 534404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
