BAC Information

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BAC

Clone NameMSMg01-114M01
Chromosome16 (Build37)
Map Location 87,926,222 - 87,926,851
singlet/doubletsinglet
Overlap geneGrik1
Upstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901
Downstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114M01.T7 (MSMg01no114_m01.b1)MSMg01-114M01.TJ (MSMg01no114_m01.g1)
ACCAG326557AG326558
length7091,189
length of high quality
(start - end)
634 (47 - 680)---
definitionCHROMAT_FILE: MSMg01no114_m01.b1 PHD_FILE: MSMg01no114_m01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:31 2005CHROMAT_FILE: MSMg01no114_m01.g1 PHD_FILE: MSMg01no114_m01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATCTGAGTCTCGCGTCCTCTAAGGATCCAAGTGTTCTAATTGGC
TTTTGACATTTTCAGTGAAATGAGAGGCAATCACGCCCCCATGGTTTAAT
ATCCTGCATTATCTAGAGTGATTTCGGAGGCTTACTCGGGATAGAGACAA
TCTGGAAAGGGAAAGCTGTCATTTAAACACTCGGTTTGGTCTTTTAGCAT
TTACCATAATTTTGGCAAAGCATACTCATAATTTGAAGAAGTGCTAAGAT
TCTCACCTTTTAAACTAATAAAATTATCTATTAGAAAGGATACAACACAC
TTACTCTGAAAATGCTATTTTAGGGCCTGACAAAGAAATAAACTTCATTG
AGCACAGTATTACAGTAAATAGAACTGGGAGATAAGCAAGAAAGATATCT
TTGGCTTAGTGGCTCCTCTAGCTACCAACTGTGACCTATGTAGGTCACTT
ATCCCAAGACCTGTTCTATAAAGGGCCTGATATAGAAAACAGAGCAATGG
ACTTGGAGAATCCTCAAGTGAAATTTCCCAGCAAAAATGTCTCTGGGTGG
ATATCCCGTGATGGGAAATCCACTATCTCCCAGTGACTATGACTTGAAGG
TCTCCTCATGCCGTCCATTTTCTATGGATAAAATGGNCATTTTTTTCTAT
TTATTTGGT
TTTATTATAAAGCCCACCCCCGCCCCCCCTCCGCTTCCCGTCCCTCCCCT
TATCCCCTATTCATTAAAAACAAAGTTTAAGGCATGGACGGTCGTTCTGG
TTCGCCGCACTCACCGCGCGACACCATCAGAAGGATCTCTGCGCAACTCA
ATCTATCCGCGCTTATTTCCCTCTTACTATCCAACATATTCTCAATAGTC
CTCATCGCACCACGCTTTTTTGTATACCACCGCCACGCAACGCTAAACAC
AACCTTATTTCCACACCGTACTCGTTTATGCCCACCCCCCTACCACGCAT
TCATAATAATATATATACGTTTGGCCACCTTAAATATATTCATCCACCAC
ACCACCGATTCGCTTTTATCATAGATTCAACATTTTCGCCGCACGACTCT
CTCCAGTTCACTCACTCTTTTTAAGCCAAGGTCCATCCAGTTATCTCAAA
ATCCTATTAAATATATGCCGTCACCACAATCTCCCCGCACCCCATTCTTC
TCCCCTTTTTTCTCCCCGTTACCTCTCCATTCTCATCCACCCACCCTCTA
TCATATATTTATATTTCCCCCCCGACCGCCTTCGTCCCTATAGCACCCAA
ATTTCCGCTTGTCTCTCGCCTCCTCGCCTGTTATTTCCCCGTCCTCACCC
GCTTCGCATCTCTCCTATTTACATCCCCTCTCTTTCCCCGCCTGTTGTCT
TTTTCACGCCGCCTGTTTGCACATAATGTCCCCTACCTACCATCTACCAA
TAACTTTCGCCTCCTCCGCCGCCAATCTGTTCTTCTTATCGTCACCTTAA
TCTTTCCGTTCGCACCCAATATTCACCGCCTCCTCATCTCCACTCGACCT
CTAATCCCCCCACCCGCGCTCTCCGACATATTAAAGCGCGACTATTTGGC
GCCCTGCGAGCGTCCTCCCTTTATATCTCCTGCTTGAGACATTACATCCG
CCGCGCCACGTCTCTGCTTTTATCACCACCCAGCCCTATACATATTTACG
CGCGCCTTTTCCTCTCTTACTTATATATAAGAGCGCTCGCCGTGCTATAT
AGCGCCTGCGCCACATATGTTCTATTTCACGCCGCGCTCTATTTCATGTA
TATTTATCGCCGCCTCGCGCGCGTACTCTATTTTGTAACGCCACCGCTCT
CTCTCTCGTTATCTTCACCCGCTCTAATTCCTTCGTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_m01.b1 MSMg01no114_m01.b1 CHROMAT_FILE:
MSMg01no114_m01.b1 PHD_FILE: MSMg01no114_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:31 2005
         (634 letters)



>mm_chr16_87926019_87927051
          Length = 1033

 Score = 1181 bits (611), Expect = 0.0
 Identities = 626/631 (99%), Gaps = 1/631 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatctgagtctcgcgtcctctaaggatccaagtgttctaattggcttttgacat 63
           |||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 ggaattcatctgagcct-gtgtcctctaaggatccaagtgttctaattggcttttgacat 775

                                                                       
Query: 64  tttcagtgaaatgagaggcaatcacgcccccatggtttaatatcctgcattatctagagt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 tttcagtgaaatgagaggcaatcacgcccccatggtttaatatcctgcattatctagagt 715

                                                                       
Query: 124 gatttcggaggcttactcgggatagagacaatctggaaagggaaagctgtcatttaaaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 gatttcggaggcttactcgggatagagacaatctggaaagggaaagctgtcatttaaaca 655

                                                                       
Query: 184 ctcggtttggtcttttagcatttaccataattttggcaaagcatactcataatttgaaga 243
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ctcggtttgatcttttagcatttaccataattttggcaaagcatactcataatttgaaga 595

                                                                       
Query: 244 agtgctaagattctcaccttttaaactaataaaattatctattagaaaggatacaacaca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 agtgctaagattctcaccttttaaactaataaaattatctattagaaaggatacaacaca 535

                                                                       
Query: 304 cttactctgaaaatgctattttagggcctgacaaagaaataaacttcattgagcacagta 363
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tttactctgaaaatgctattttagggcctgacaaagaaataaacttcattgagcacagta 475

                                                                       
Query: 364 ttacagtaaatagaactgggagataagcaagaaagatatctttggcttagtggctcctct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ttacagtaaatagaactgggagataagcaagaaagatatctttggcttagtggctcctct 415

                                                                       
Query: 424 agctaccaactgtgacctatgtaggtcacttatcccaagacctgttctataaagggcctg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 agctaccaactgtgacctatgtaggtcacttatcccaagacctgttctataaagggcctg 355

                                                                       
Query: 484 atatagaaaacagagcaatggacttggagaatcctcaagtgaaatttcccagcaaaaatg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 atatagaaaacagagcaatggacttggagaatcctcaagtgaaatttcccagcaaaaatg 295

                                                                       
Query: 544 tctctgggtggatatcccgtgatgggaaatccactatctcccagtgactatgacttgaag 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tctctgggtggatatcccgtgatgggaaatccactatctcccagtgactatgacttgaag 235

                                          
Query: 604 gtctcctcatgccgtccattttctatggata 634
           |||||||||||||||||||||||||||||||
Sbjct: 234 gtctcctcatgccgtccattttctatggata 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1033
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1023
Effective search space:   638352
Effective search space used:   638352
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)