Query= MSMg01no115_b15.b1 MSMg01no115_b15.b1 CHROMAT_FILE:
MSMg01no115_b15.b1 PHD_FILE: MSMg01no115_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:57 2005
(535 letters)
>mm_chr16_75544358_75545293
Length = 936
Score = 920 bits (476), Expect = 0.0
Identities = 515/528 (97%), Gaps = 3/528 (0%)
Strand = Plus / Plus
Query: 11 aaaa-aaaa-aaaagaaaagaaaaggaacaaaatctgcagggccaggacaatatgattca 68
|||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 209 aaaagaaaagaaaagaaaagaaaaggaacaaaatctgcagggccaggacaataggattca 268
Query: 69 agacaagagttaatttatcaaattccttcatagaagaaaataagatgtattaccttttat 128
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 269 agacaagagttaatttatcaaattccttcatagaagaaaataagatttattaccttttat 328
Query: 129 gccttaaagttattatagtacaatattataatcaatcattccttatagcaagattagata 188
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 329 gccttaaagttattatagtacaatattataatcaatcattccttatagcaagcttagata 388
Query: 189 taggaatataattttaaggcatattataatctaactgttccaattcagaaaa-aaaatat 247
|||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 389 taggaataaaattataaggcatattataatctaactgttccaattcagaaaataaaatat 448
Query: 248 tgattatccaaagagaataatttgtcatttttttgagaaacaaacataatataccaatag 307
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 449 tgattatccaaagagaataatttgtcatttttttgagaaacaaagaaaatataccaatag 508
Query: 308 aactttcaatacaatcaaggcaacaggcaccacagctacttgtaaaagtactgaaaataa 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aactttcaatacaatcaaggcaacaggcaccacagctacttgtaaaagtactgaaaataa 568
Query: 368 aatttgtttcaggatgaagaaaacatgaggaattttcaaagatattatattgtacttcct 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aatttgtttcaggatgaagaaaacatgaggaattttcaaagatattatattgtacttcct 628
Query: 428 taataatgcacccacaatataaagaattattgtgaaaactgctttagaaagtaaattaga 487
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 629 taataatgcacccacaatataaagaattattgtgaaaactgctttagaaagtaaattaaa 688
Query: 488 ccaggtgagaacatgtgtctatcagaaaaagcatttaaggacgagact 535
||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 689 ccaggtgagaacatgtgtctatcggcaaaagcatttaaggacgagact 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 936
Length adjustment: 10
Effective length of query: 525
Effective length of database: 926
Effective search space: 486150
Effective search space used: 486150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_b15.g1 MSMg01no115_b15.g1 CHROMAT_FILE:
MSMg01no115_b15.g1 PHD_FILE: MSMg01no115_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:58 2005
(501 letters)
>mm_chr16_75709325_75710227
Length = 903
Score = 797 bits (412), Expect = 0.0
Identities = 479/502 (95%), Gaps = 3/502 (0%)
Strand = Plus / Minus
Query: 3 gcatgatgaatgctctctctccctgctggaagcacagtttaattctcatgctcaaggtca 62
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 619 gcatgatgaatgctctctctccctgctggaagcacagtttaattctcatgcccaaggtca 560
Query: 63 ggcggtccaagaaagtttgacacacacctcacaactctgatcttaaaggcatccctcacc 122
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 559 ggcggtccaagaaaatttgacgcacacctcacaactctgatcttaaaggcatccctcacg 500
Query: 123 attgacttgcctcgtcacaactcattatcatttctccaattagtacataaacaaatcacc 182
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 attgacttgcctcatcacaactcattatcatttctccaattagtacataaacaaatcacc 440
Query: 183 tagactgtattttgagaccttcatgactgtatgcagcctactgttccactataacttcta 242
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 439 tagactgtattttgagaccttcatgactgtatgcagcccactgttccactataacttcta 380
Query: 243 ttaagtaaatgggcctgcgtgtgctcacatgcacgcacacatgtatgtggaaatgcatgg 302
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 379 ttaagtaaatgggcgtgcgtgtgctcacatgcacacacacatgtatgtggaaatgcatgg 320
Query: 303 ttgcacacatgttcatgtttgtctgtctcata--gcacctcaccactcagaactacctga 360
|||||||||||| ||||||||||||||||||| |||||| | |||||| |||||||||
Sbjct: 319 ttgcacacatgtccatgtttgtctgtctcatatagcaccttaatactcaggactacctga 260
Query: 361 aaataagccctagtgggagctatggagaggcatctctcaggtaaaggatcttataca-gt 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 259 aaagaagccctagtgggagctatggagaggcatctctcaggtaaaggatcttatacatgt 200
Query: 420 gtttggctcccaaagcacatgtggtttctcacaaccatctctaataccagttcaagggtc 479
|||||| ||||| |||||||||||||||||||| |||||||||| |||||||| ||||||
Sbjct: 199 gtttggttcccagagcacatgtggtttctcacagccatctctaacaccagttctagggtc 140
Query: 480 gccaatactctcttctggcctc 501
|||||||||||||||||||||
Sbjct: 139 accaatactctcttctggcctc 118
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 903
Length adjustment: 10
Effective length of query: 491
Effective length of database: 893
Effective search space: 438463
Effective search space used: 438463
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
