Query= MSMg01no115_d20.b1 MSMg01no115_d20.b1 CHROMAT_FILE:
MSMg01no115_d20.b1 PHD_FILE: MSMg01no115_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:08 2005
(255 letters)
>mm_chr16_41351658_41352312
Length = 655
Score = 485 bits (251), Expect = e-142
Identities = 254/255 (99%)
Strand = Plus / Minus
Query: 1 ctttgataaaagaataaagagacatgttgtctctagagaaagcttctggggttcctgtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ctttgataaaagaataaagagacatgttgtctctagagaaagcttctggggttcctgtgg 396
Query: 61 tcttcacaataggcatggtgccagctatctgtatatcctgtctcctccttgttctgactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tcttcacaataggcatggtgccagctatctgtatatcctgtctcctccttgttctgactc 336
Query: 121 tcccatgtgctaaaatgaaagacatggatgtccaatgctactcaaacattttcttttaaa 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 335 tcccatgtgctaaaatgaaagacatggatggccaatgctactcaaacattttcttttaaa 276
Query: 181 ctacagaggtcgactgctacatctctccagttgaagaacagaacaaagcaagagagagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ctacagaggtcgactgctacatctctccagttgaagaacagaacaaagcaagagagagga 216
Query: 241 gatcacaaaaagaca 255
|||||||||||||||
Sbjct: 215 gatcacaaaaagaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space: 158916
Effective search space used: 158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no115_d20.g1 MSMg01no115_d20.g1 CHROMAT_FILE:
MSMg01no115_d20.g1 PHD_FILE: MSMg01no115_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:08 2005
(622 letters)
>mm_chr16_41209141_41210162
Length = 1022
Score = 1164 bits (602), Expect = 0.0
Identities = 616/622 (99%), Gaps = 5/622 (0%)
Strand = Plus / Plus
Query: 1 ctaagatatttaactgtctataatgctattagattaagtaatagttttcaggcttaatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaagatatttaactgtctataatgctattagattaagtaatagttttcaggcttaatcc 260
Query: 61 atttttattttaatgtttttcaaaaatatgtttccatcatctttgcccttccctaactcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttttattttaatgtttttcaaaaatatgtttccatcatctttgcccttccctaactcc 320
Query: 121 ttcccaatccttcccaactcttatccacccatttcatgtcctttactcaaaaaaaaaaaa 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 ttcccaatccttcccaactcttatccacccatttcatgtcctttactc---aaaaaaaaa 377
Query: 181 aattaaataccacaacaaagctaaacaaaagtgacccctctcaacatttaaaatagagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aattaaataccacaacaaagctaaacaaaagtgacccctctcaacatttaaaatagagtc 437
Query: 241 tgatttgtgctgatcaactagtcctgggaatgaaactttctctggaatgctgtagttatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgatttgtgctgatcaactagtcctgggaatgaaactttctctggaatgctgtagttatg 497
Query: 301 cctagtggcactcccttggaaaaaaaaatatgattttctctttcccagaaggtatccatt 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cctagtggcactcccttgg-aaaaaaaatatgattttctctttcccagaaggtatccatt 556
Query: 361 gcaaatagcttcttggttatgtgtaggaaactcattgttaaatacttatgaatgatgtgc 420
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 g-aaatagcttcttgtttatgtgtaggaaactcattgttaaatacttatgaatgatgtgc 615
Query: 421 tgttacactaggaaaaaatagcatgtggtagatttctcaagatcttaagacatatattaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tgttacactaggaaaaaatagcatgtggtagatttctcaagatcttaagacatatattaa 675
Query: 481 aaaatatcagattatattttatttttgtgtctattactatacatatgcatgttagatttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 aaaatatcagattatattttatttttgtgtctattactatacatatgcatgttagatttc 735
Query: 541 aaaatggtgtaccaaaaacaaacaaacaaacaaaaaaccccacagaaatataaattattg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 aaaatggtgtaccaaaaacaaacaaacaaacaaaaaaccccacagaaatataaattattg 795
Query: 601 agtctctaaagaaactgtagac 622
||||||||||||||||||||||
Sbjct: 796 agtctctaaagaaactgtagac 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
