BAC Information

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BAC

Clone NameMSMg01-115N09
Chromosome16 (Build37)
Map Location 66,273,950 - 66,274,220
singlet/doubletsinglet
Overlap genenone
Upstream genePou1f1, Chmp2b, EG383186, Vgll3, LOC664846, LOC100039035
Downstream geneCadm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115N09.T7 (MSMg01no115_n09.b1)MSMg01-115N09.TJ (MSMg01no115_n09.g1)
ACCAG327366AG327367
length762713
length of high quality
(start - end)
276 (37 - 312)529 (82 - 610)
definitionCHROMAT_FILE: MSMg01no115_n09.b1 PHD_FILE: MSMg01no115_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:53 2005CHROMAT_FILE: MSMg01no115_n09.g1 PHD_FILE: MSMg01no115_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTT
CTCAGTACATTCATGGCTATGTTCTCTATTTTCATCATAGCCATATATTG
TACTTTGGCGCACAATATTTTCCCTTGTGGTTGAATGCAAAACAGCTGTG
TATTCTGCCTTCTGTTGTTGGGTTGGGTGCTGACTAAATAATCTAAGACA
GCCTAAATTTTGAGTTGTTCCTCACTAAAAGGGACAGGCAGTGCTAAAAA
AGGAATCTATTGAAAAACAGGTCTTTTGTTTTTTGGTTTTTTGTTCTTTT
TTTTGTTTTTGNTTTTGCCNCCCCCTCCCCCCCCTCCTCTCCCCCCCCTC
CTCTCCCCTCCCCCCCCTCCCTTTCCTCCCCTCCCTCCCCTTTCTTCTTT
TTCTTCCCCCCCCTTTTTTTCTTCCTTTCCCCCCCCTCCTCCCTCTCTTC
CCTTCTCCCCTCTTTTCCCCCCCCTTTCCCCCCCCTCCCCCTTTCTCNTN
TTTNTCTCCTCCTCCCCTCCTTTCCTTCCTCTTTTTCCCCTTTTTTCCTC
CCCCCCCCCCCCTCCCCNNCCCTTCTCCCTTCCTTCCTCTTTTTTTTTCC
CCCTCCCCCCTCCCTTCTTTCTTCTCCTTTCTCTTCCTCTTCTCCTCCCC
TCCCCCCCCCCTTCTTTTTCCCTCCCCCCCCCTCTCCCCCCCTCTCCTCC
CTCCTTCTTTTCCCTCCTTTTTTTCCCCTCTTCTTTCTTCCCCCCTCTCT
CCCTCCTCCCTC
CCCCNCCCCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAA
TGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACCCTGAGATTCCACCTCACAACAGTCAGAATGGC
TAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCATGGATGTGGAGAAA
GAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCTCTC
TGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGA
AGATCCAGCAATACCTCTTCTGGGCATATATCCAGAAAATGCCCCAACTG
GTAAGAAGGACACATGCTCCACTACGCTCATAGCAGCCTTATTTATAATA
GCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACA
GAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGA
ATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATC
CTGAGTGAGGTAACCACATTCACAAAGGAACTCACACAATATGTACTCAC
TGATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATTAAGATA
CCATTTGCTTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_n09.b1 MSMg01no115_n09.b1 CHROMAT_FILE:
MSMg01no115_n09.b1 PHD_FILE: MSMg01no115_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:53 2005
         (276 letters)



>mm_chr16_66273746_66274421
          Length = 676

 Score =  495 bits (256), Expect = e-144
 Identities = 268/272 (98%), Gaps = 2/272 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccttctcagtacattcatggctatgttctctattttcatcatagccatatattg 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattcccttctcagtacattcatggctatgttctctattttcatcatagccgtatattg 264

                                                                       
Query: 65  tactttggcgcacaatattttcccttgtggttgaatgcaaaacagctgtgtattctgcct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tactttggcgcacaatattttcccttgtggttgaatgcaaaacagctgtgtattctgcct 324

                                                                       
Query: 125 tctgttgttgggttgggtgctgactaaataatctaagacagcctaaattttgagttgttc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctgttgttgggttgggtgctgactaaataatctaagacagcctaaattttgagttgttc 384

                                                                       
Query: 185 ctcactaaaagggacaggcagtgctaaaaaaggaatctattgaaaaa-caggtcttttgt 243
           ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 385 ctcactaaaagggacaggcagtgctaaaaaaggaatctatttaaaaaacaggtcttttgt 444

                                           
Query: 244 tttttggttttttgttcttttttttgtttttg 275
           |||||||||||||||||||||||| |||||||
Sbjct: 445 tttttggttttttgttcttttttt-gtttttg 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)