BAC Information

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BAC

Clone NameMSMg01-116A12
Chromosome16 (Build37)
Map Location 18,857,725 - 18,858,158
singlet/doubletsinglet
Overlap genenone
Upstream geneDgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf, Comt, Txnrd2, Gnb1l, Tbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik
Downstream geneMrpl40, Hira, Igl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5, LOC100042935
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116A12.T7 (MSMg01no116_a12.b1)MSMg01-116A12.TJ (MSMg01no116_a12.g1)
ACCAG327513AG327514
length726722
length of high quality
(start - end)
557 (75 - 631)548 (76 - 623)
definitionCHROMAT_FILE: MSMg01no116_a12.b1 PHD_FILE: MSMg01no116_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:09 2005CHROMAT_FILE: MSMg01no116_a12.g1 PHD_FILE: MSMg01no116_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:09 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCC
GCGGAATTCACTCTGTAGATCCAGACGACCTTGAACTCAGAGATCAGCCT
GCCTCTGTCTCCCAAGTGTTGGGATTAAAGGCATATGCCACCACTACCCA
GCTGTTAACACTAACCTTGGAAGGCTGAGTCAGGAGCATTTTGAGTCAGG
AGAAATTGCATAGAAGAATGTAAATAGATCCATATTTATCACCCTGCACA
AAACTGAACTTTTAATTGGGTCAAGGACCTTAACATAAGAGCAGATATAC
TAAACCTGATAGAAGAGAAGTGGGGAAATAATCTTGAACTTATTGACACA
GGAAAAGACTTTCTAAACAGGCACTAAGATCAACAATTAATAAATGGTGA
TGTGCCAGGAAGTGTTTATGAATCCAAAAGACCACCAAGGAGCCATCTCT
GGCATAATAGCATTAGAGTCTCTTTATTACAAGCTCAGGCTTGGGCTCTC
TTCCAACCCAACCCCGACACAAGAGGGCAGGAAGGGAAGGTGGAGCCACC
TTGAACCCTCAACAAGACAAGTTTTTATAGGAAAATAGGAGCAAGTGATG
TTGGAGTTCGTCAGAAGACCCTTACTCAGAACGACCTCCGAGACAGCCGC
CATCGCTGCAAAACACATGAGGATTTTTATTGATCCAACATGTTGGGGAC
TCCTCTCCCAGCACACAGGCCAGAGG
NNTTCATGACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAACAAACTATCTGCAGCTGGCAAAA
TCATGCCCCTGCCAGAGCATGACGCTGTGGCATTCTGTTGCTATGGTTAA
TCTGAAGCAGCCCCATATTCCACACCTGGTGTTGTGGTTCGAATAAACTT
GGCCCATGAGAAATGGCACTATTCTGAGGTGTGGCCTTCTGGAATAGGTG
TGGCCTAGTTGGAGGGAGTGTGTCACTGTGTAGGTGGGCTTTGAGGTCCT
ATGCTCAAGCTTTTCCCTGTGCAGAAGAGACCCTCCTCTTAGCTGCCCAT
TAGACATTCTTGGGAAGTAGTTGAATGCTTTAAATGGGGCTTAATGGACC
ATCCTAGTAGGAATAAGAAAGATATTGGTGCTGAGGGTGATTTAAACTGT
GCAGCCCTTGATCTAGAGGTTTCAAAGGAGAGGAATTTTAGTACATTGCC
TGAAGATTGTTCTTCTGGTGTTTTGGTGAAGAATGTGGCTGATTTTTGTC
CTTGTCTGAAGAGTCTGCCTGAGGCTAAGGTTAAGAGATTCATCTGGCTA
ATTGTATTGACAAAGGAAGTCTTCAATCAACCAAGTTTAGACTCTGTCCT
GTGGTTAATTCTTTTGAAGAGCATTTTGATTAAACCTAACAAGCTTATAA
AGAAAAAATGCAAAATGTATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_a12.b1 MSMg01no116_a12.b1 CHROMAT_FILE:
MSMg01no116_a12.b1 PHD_FILE: MSMg01no116_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:09 2005
         (557 letters)



>mm_chr16_18857202_18858158
          Length = 957

 Score =  832 bits (430), Expect = 0.0
 Identities = 433/434 (99%)
 Strand = Plus / Minus

                                                                       
Query: 124 aggagaaattgcatagaagaatgtaaatagatccatatttatcaccctgcacaaaactga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 aggagaaattgcatagaagaatgtaaatagatccatatttatcaccctgcacaaaactga 898

                                                                       
Query: 184 acttttaattgggtcaaggaccttaacataagagcagatatactaaacctgatagaagag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 acttttaattgggtcaaggaccttaacataagagcagatatactaaacctgatagaagag 838

                                                                       
Query: 244 aagtggggaaataatcttgaacttattgacacaggaaaagactttctaaacaggcactaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 aagtggggaaataatcttgaacttattgacacaggaaaagactttctaaacaggcactaa 778

                                                                       
Query: 304 gatcaacaattaataaatggtgatgtgccaggaagtgtttatgaatccaaaagaccacca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 gatcaacaattaataaatggtgatgtgccaggaagtgtttatgaatccaaaagaccacca 718

                                                                       
Query: 364 aggagccatctctggcataatagcattagagtctctttattacaagctcaggcttgggct 423
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 aggagccatctctgacataatagcattagagtctctttattacaagctcaggcttgggct 658

                                                                       
Query: 424 ctcttccaacccaaccccgacacaagagggcaggaagggaaggtggagccaccttgaacc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ctcttccaacccaaccccgacacaagagggcaggaagggaaggtggagccaccttgaacc 598

                                                                       
Query: 484 ctcaacaagacaagtttttataggaaaataggagcaagtgatgttggagttcgtcagaag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ctcaacaagacaagtttttataggaaaataggagcaagtgatgttggagttcgtcagaag 538

                         
Query: 544 acccttactcagaa 557
           ||||||||||||||
Sbjct: 537 acccttactcagaa 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)