BAC Information

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BAC

Clone NameMSMg01-117P09
Chromosome16 (Build37)
Map Location 81,525,201 - 81,525,754
singlet/doubletsinglet
Overlap geneNcam2
Upstream geneLOC621365, LOC100039724
Downstream geneLOC621470, LOC435484, Pgk1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117P09.T7 (MSMg01no117_p09.b1)MSMg01-117P09.TJ (MSMg01no117_p09.g1)
ACCAG328958AG328959
length732725
length of high quality
(start - end)
687 (46 - 732)654 (70 - 723)
definitionCHROMAT_FILE: MSMg01no117_p09.b1 PHD_FILE: MSMg01no117_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:40 2005CHROMAT_FILE: MSMg01no117_p09.g1 PHD_FILE: MSMg01no117_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGATGCATACCGAATGGCAGAGAAGCACTTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAG
AAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACCT
AGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAGA
AGAATGAAGACTGAAGTGTGGACACTATGCCA
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTCATCTCAAGAATAAAGATATACAATTGT
TTATTCATTAGTCTGTAAGTTATATTTTATAGTTTGAATGTGTGTGTGCC
GATATGCCCTCTGCTTGGTCAAATATATATATATAGTCCCGTGTCTTTAG
CTATTTAGGAATTGTTTCCTTAATTATTTTTCAATCATGTGAATAGTGCT
GGCATATAGAAATATTATGTATTAATATGTTTATTGGTTTTTGTGTTCTG
TTGCCTTTTATAATCATTTTTTCTATCAGCTTGTTTGGGAATATTTAGGA
TTTTAAATAGAAGATTATGAAAACAAACTGAAGTTTGAGGTGAGTTGGAA
ATTTGTTATAATTTTCCTACATAACTAATTTAGTTAGGATTTCCAACAAT
ATGTTGAACAAAGGTGATAAAATGAAACAAAACAAACAAACAAAACTAGT
CAATTTTGTATTATTCTGCTGTGGAGGAAAGTGCTTCACTGGTCCCTACC
ATCCGGTATGATGAAGTCTGTGTGTTCATTTTTAGGCTAGGAAACACTAA
AGTTGGACATCTTGTTTTATGTCACACAATTTGTAAGGCAAAGTTACAGT
GATTGAAGCCATGTGGTCCTACATTTTCCTGAGTATGTACTTCTTAAATC
CTACTACTGTATTTGCTTCTGAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_p09.g1 MSMg01no117_p09.g1 CHROMAT_FILE:
MSMg01no117_p09.g1 PHD_FILE: MSMg01no117_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:40 2005
         (654 letters)



>mm_chr16_81524701_81525754
          Length = 1054

 Score = 1033 bits (534), Expect = 0.0
 Identities = 549/554 (99%)
 Strand = Plus / Minus

                                                                        
Query: 101  caaatatatatatatagtcccgtgtctttagctatttaggaattgtttccttaattattt 160
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 caaatatatatatatagtcccgtgtctttagctatttaggaattgtttccttaattattt 995

                                                                        
Query: 161  ttcaatcatgtgaatagtgctggcatatagaaatattatgtattaatatgtttattggtt 220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994  ttcaatcatgtgaatagtgctggcatatagaaatattatgtattaatatgtttattggtt 935

                                                                        
Query: 221  tttgtgttctgttgccttttataatcattttttctatcagcttgtttgggaatatttagg 280
            |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 934  tttgtgttctgttgccttttataatcgtttgttctatcagcttgtttgggaatatttagg 875

                                                                        
Query: 281  attttaaatagaagattatgaaaacaaactgaagtttgaggtgagttggaaatttgttat 340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874  attttaaatagaagattatgaaaacaaactgaagtttgaggtgagttggaaatttgttat 815

                                                                        
Query: 341  aattttcctacataactaatttagttaggatttccaacaatatgttgaacaaaggtgata 400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814  aattttcctacataactaatttagttaggatttccaacaatatgttgaacaaaggtgata 755

                                                                        
Query: 401  aaatgaaacaaaacaaacaaacaaaactagtcaattttgtattattctgctgtggaggaa 460
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 754  aaatgaaacaaaacaaacaaataaaactagtcaattttgtattattctgctgtggaggaa 695

                                                                        
Query: 461  agtgcttcactggtccctaccatccggtatgatgaagtctgtgtgttcatttttaggcta 520
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 694  agtgcttcactggtccctaccatccggtatgatgaagtctgtgtgttcattcttaggcta 635

                                                                        
Query: 521  ggaaacactaaagttggacatcttgttttatgtcacacaatttgtaaggcaaagttacag 580
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634  ggaaacactagagttggacatcttgttttatgtcacacaatttgtaaggcaaagttacag 575

                                                                        
Query: 581  tgattgaagccatgtggtcctacattttcctgagtatgtacttcttaaatcctactactg 640
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574  tgattgaagccatgtggtcctacattttcctgagtatgtacttcttaaatcctactactg 515

                          
Query: 641  tatttgcttctgag 654
            ||||||||||||||
Sbjct: 514  tatttgcttctgag 501


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)