Query= MSMg01no119_l06.b1 MSMg01no119_l06.b1 CHROMAT_FILE:
MSMg01no119_l06.b1 PHD_FILE: MSMg01no119_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:55 2005
(553 letters)
>mm_chr16_81134089_81135040
Length = 952
Score = 922 bits (477), Expect = 0.0
Identities = 538/565 (95%), Gaps = 18/565 (3%)
Strand = Plus / Minus
Query: 4 gaattctcctagatctctcttcttcaacgtatgaattatgaaagaaaactcctcccattt 63
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 675 gaattctcctagatctctcttcttcaacatatgaattatgaaagaaaactcctcccattt 616
Query: 64 gttggctttgtgaagatacagaattttgataccatgcctttagtcttctgcctcctgtaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gttggctttgtgaagatacagaattttgataccatgcctttagtcttctgcctcctgtaa 556
Query: 124 ttaaaaccaaggataaattgataaatgtgtatgttatcttggggacaattcaggaaagaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ttaaaaccaaggataaattgataaatgtgtatgttatcttggggacaattcaggaaagaa 496
Query: 184 actgtatcactttggctcatatttccttgctaggaactggtaaccttcccccacatgctt 243
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 495 actgtatcactttggctcacatttccttgctaggaactggtaaccttccaccacatgctt 436
Query: 244 aactgtgatctgaattttatcaagttcttatt--ataagagctaataacatagtctagtt 301
||||||| ||||||||||||||| ||||| | | ||||||||||||||||||||||||
Sbjct: 435 aactgtggtctgaattttatcaa-ttctt--tggagaagagctaataacatagtctagtt 379
Query: 302 ctaattttgcctaccacagaaatccactttgtaactgtacatagattcttagtgtaatac 361
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 378 ctaattttgcctaccacagaaatccactttgtaactgaacatggattcttagtgtaatac 319
Query: 362 aaactatttgtcagagttcatattggaaatattctttaaataaggacctcatatttgttt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aaactatttgtcagagttcatattggaaatattctttaaataaggacctcatatttgttt 259
Query: 422 acaatacatggtttcaaaacagaatgaactaatagcaaggatttgggattgtaaa-tc-- 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 258 acaatacatggtttcaaaacagaatgaactaatagcaaggatttgggattgtaaaatccc 199
Query: 479 -tt-a--aat------cttaaattttcacaagaatggggcagaatatattattaaaagta 528
|| | ||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 198 cttgaccaatattagtcttaaattttcaaaagaatggggcagaatatattattaaaagta 139
Query: 529 aattgttgcatgaccattaattata 553
||||||||||||||||||| |||||
Sbjct: 138 aattgttgcatgaccattagttata 114
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 952
Length adjustment: 10
Effective length of query: 543
Effective length of database: 942
Effective search space: 511506
Effective search space used: 511506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no119_l06.g1 MSMg01no119_l06.g1 CHROMAT_FILE:
MSMg01no119_l06.g1 PHD_FILE: MSMg01no119_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:55 2005
(420 letters)
>mm_chr16_81046151_81046968
Length = 818
Score = 750 bits (388), Expect = 0.0
Identities = 412/420 (98%), Gaps = 2/420 (0%)
Strand = Plus / Plus
Query: 1 attctttaatagattaatnagtggatcttttatatttaattaaacactttcggctttaaa 60
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 attctttaatagattaat-agtggatcttttatatttaattaaacacttt-ggctttaaa 258
Query: 61 ttcataattaaacactttcaaactgatgatattaatgatgagatatacagttttcttcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttcataattaaacactttcaaactgatgatattaatgatgagatatacagttttcttcct 318
Query: 121 ggcttgtaaggaataatcatgaaatatcaacataatcactaaataaatcactcattgact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggcttgtaaggaataatcatgaaatatcaacataatcactaaataaatcactcattgact 378
Query: 181 taaacccaatgacattactgatgtattgaaaaatacaaggactccataagaggataagaa 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 taaacccaataacattactgatgtattgaaaaatacaaggactccataagaggataagaa 438
Query: 241 aataatacatttatttgtaaactatcatttctggatgcagtgaagtaaatcaagattgag 300
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 439 aataatacatttaaatgtaaactatcatttctggatgcagtgatgtaaatcaagattgtg 498
Query: 301 ttcagaaggagtcaagaaaaatatggtatcaaaatctataatgaaatatacaaattgtgc 360
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttcagaaggagtcaagaaaaaaatggtatcaaaatctataatgaaatatacaaattgtgc 558
Query: 361 agggagttaacaaacacatcctagcatcatattacaagttactattcctttcattattag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agggagttaacaaacacatcctagcatcatattacaagttactattcctttcattattag 618
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 818
Length adjustment: 9
Effective length of query: 411
Effective length of database: 809
Effective search space: 332499
Effective search space used: 332499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
