BAC Information

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BAC

Clone NameMSMg01-120C05
Chromosome16 (Build37)
Map Location 74,114,989 - 74,115,395
singlet/doubletsinglet
Overlap geneRobo2
Upstream geneLOC100039310, LOC100039318, LOC100039326
Downstream geneLOC665042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120C05.T7 (MSMg01no120_c05.b1)MSMg01-120C05.TJ (MSMg01no120_c05.g1)
ACCAG330580AG330581
length699710
length of high quality
(start - end)
406 (57 - 462)230 (76 - 305)
definitionCHROMAT_FILE: MSMg01no120_c05.b1 PHD_FILE: MSMg01no120_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:29 2005CHROMAT_FILE: MSMg01no120_c05.g1 PHD_FILE: MSMg01no120_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAACCG
CGGAATCACTTTGAATCCCAATTTAAATGTCAAGTCTGACAAAGAATTCT
CTGTCCTTTAAAGAGAAACTGTAATGCTTATAGTACTTTATTCTTCTGTC
AGCAGCTAAACTCTGGTGATTAATTTCTTAGCAACAAACACAGTAAAGTG
TGCTAAACATTGTACTTCAGTTTTATCTCGTTATCTTTGTAGGATAGCTC
AGAAGTGTGTATTCATATTTTTCTCCAATTTGGAAATGATACAGATAAGA
CCATATAAAAGTTAGAAAACTTTCCTAGCTTGTGGATAACCTATCTGGAA
TTGATTCAGGTTCTAACTTTTAATGTTTGTTCTCATAATCCCAACATGAT
TCCTGCTTAAATACTAAATTAAACAATAACAGATGTGTACCATTTTTTTC
TCCTTTCTTTTAATAAGGGGGATAATATAGAAGGAAAATTTATGCATGTG
GAGAGGACTTTTAATTTTTAAAATTACATAAAACTCTTTAATCTTTTTAG
CGTTTCATAAGCCCGCGATTTAATACATTTGATTACAACTTATTCCATTA
GAATTCCAGCCAATCAGCCAGTGCGCCCACACTCCCGTTAGTGCTACTGA
AGCATATTTTGTCAGCGTCCCATATTTTCAGAGAGTTTATTCCACTTTA
NNTTCGATGCAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTCTGGAATTCATCAGAAAATGGATGACGTGGAAA
GTATACTGTTAAGCAAGATTACTCAAACTGAGAAAAAAATAGCCTGTGTG
TTCTCCCTCAAGTATATGTGTGTATAGGTATGTAGCCTATACACACATAT
ACACACATATACATATGTATATATGAAAAACATATATATGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGAGATACTTAAAACATTTGAAGGTGTC
TGAACGAGCATCAAAAATAAATGATTTTTTTGCATATACTATAGGCAAAA
GGAATTGTGTCACAATATGAATATACCCGAAAAAGATGTAGCACTTACTT
TATAAAATACCTCTTTATAAATTTAGTCTACAAAATGATTTTTATTTTTA
ATCTTGTTATCAACTCTTGCTCTCACTCTGATTACATTAAAAGCAACCGC
ATATTCTCACCGATTCTGATATTGTCCTTGAATTAATTTATCTAGTTGAT
TTTCGTGAGATTGTATTATTCTCCCCCTATCACAAAAAAATCTATTGCAT
ACATTGACAATTCAATTTCGTCTTTCCCGTAACCTTTTTACTTTACCCCT
TCTTTGCACGAATACAATAATTCGTATTTCGTTTGCACATATCAAGTCCC
CCCCTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_c05.b1 MSMg01no120_c05.b1 CHROMAT_FILE:
MSMg01no120_c05.b1 PHD_FILE: MSMg01no120_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:29 2005
         (406 letters)



>mm_chr16_74114789_74115595
          Length = 807

 Score =  772 bits (399), Expect = 0.0
 Identities = 405/407 (99%), Gaps = 1/407 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactttgaatcc-caatttaaatgtcaagtctgacaaagaattctctgtcctttaaagag 59
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 cactttgaatccaaaatttaaatgtcaagtctgacaaagaattctctgtcctttaaagag 548

                                                                       
Query: 60  aaactgtaatgcttatagtactttattcttctgtcagcagctaaactctggtgattaatt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 aaactgtaatgcttatagtactttattcttctgtcagcagctaaactctggtgattaatt 488

                                                                       
Query: 120 tcttagcaacaaacacagtaaagtgtgctaaacattgtacttcagttttatctcgttatc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tcttagcaacaaacacagtaaagtgtgctaaacattgtacttcagttttatctcgttatc 428

                                                                       
Query: 180 tttgtaggatagctcagaagtgtgtattcatatttttctccaatttggaaatgatacaga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tttgtaggatagctcagaagtgtgtattcatatttttctccaatttggaaatgatacaga 368

                                                                       
Query: 240 taagaccatataaaagttagaaaactttcctagcttgtggataacctatctggaattgat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 taagaccatataaaagttagaaaactttcctagcttgtggataacctatctggaattgat 308

                                                                       
Query: 300 tcaggttctaacttttaatgtttgttctcataatcccaacatgattcctgcttaaatact 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tcaggttctaacttttaatgtttgttctcataatcccaacatgattcctgcttaaatact 248

                                                          
Query: 360 aaattaaacaataacagatgtgtaccatttttttctcctttctttta 406
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aaattaaacaataacagatgtgtaccatttttttctcctttctttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 807
Length adjustment: 9
Effective length of query: 397
Effective length of database: 798
Effective search space:   316806
Effective search space used:   316806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)