BAC Information

Click to search

BAC

Clone NameMSMg01-120E22
Chromosome16 (Build37)
Map Location 64,346,933 - 64,347,087
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha3, LOC100043540
Downstream geneCkt2, 4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120E22.T7 (MSMg01no120_e22.b1)MSMg01-120E22.TJ (MSMg01no120_e22.g1)
ACCAG330707AG330708
length669736
length of high quality
(start - end)
495 (34 - 528)158 (141 - 298)
definitionCHROMAT_FILE: MSMg01no120_e22.b1 PHD_FILE: MSMg01no120_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:42 2005CHROMAT_FILE: MSMg01no120_e22.g1 PHD_FILE: MSMg01no120_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCGCTAAACGACTACTATTCCAAGAGGATCCGCGGAATTCACTACT
TGACAAGTTTTATTTACTTTCTTTTGCTGCTTGTTTGTGTTTTCATGGAT
TTCTTTTTTTTAAATTTTTAATATTTATTACGTATTTTCCTCAATTACAT
TTCCAATGCTATCCCAAAAGTCTCCCATACCCTCCCCCTCACTTCCCTAC
CCACCCATTCCCAATTTTTTGGCCCTGGCGTTCCCCTGTACTCGGGCATA
TAAAGTTTGTGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCTGATTAGG
CCATCTTTTGATACATATGCATCTAGGAATTTATTTCTCTTTTAAGGATG
TCTTTTATATTCATAAAGGCTATTTTACATTTCCTGTCTTGCACTTAAGC
TGTTTGGCATTTCTCAGAGCCTACTGTAGTGAGGTTGCTGGACTCTGGTA
AAGACATTTTTCCTGAATGTAATTGACTGCATTTTTATATTAACATTTAG
GGACCTGGGTTTGGTATGATTGTAATTCTAAGTGCGGATATCTGATCTTG
TCTTTGTTGAGTGTGTGAGGTTTTTCCCTCCTTATTTCTGTTCTCCTCTC
TAATTCTTAAAGAGGGTTTTGTTGCGCGCTGCCTGGCATAGGATTCTTCT
GGGATCCTCCCAGGTTTGT
AAAAAAATAGGAGGGGTGCCGCCGGGAAAATCCAACAATCCCCAAACAAC
ATATCTCGATGATATGGGAGGCCTGGNGGCGCCGGGTCGNCACGGGAGGN
GACACANAGAATTTCAAAAAAAGTCTTGAAACANAAAAGGACCTTGCCTT
TACTAAGTTAACCTTCTAGCGGGAATTTGCCTTACTCAGGAAAATCTTGA
AGAGAGTAACAGTGCATAATTAGAGACTTACAGCAAGGATGAAGAATATC
AAACCTAAAACAACAAAGGAAACAGGAAGAAGGCTGGGGTCAGTGCGCAC
ATCATTATGAGCTGTATCAACTAATTTAACAAGGGTCTGGTTCGGTGGAA
GATTATAAACCTTTCTTTTTTTTTTCTGACGCAAAAGCACATATAAAAGT
GTCTTATATTCTACCTCACGGCATATAAAAATGCTATTTCGGTTTTAATA
AACTCGTACACAAATTCTTCAGTGAATAGGTTATCTCATTTCCCTGAGGT
CATCTAACATTAGTATCAACAAACCATGGGGCATTTTCTGGCTTCTAAAA
CTCAAAGCCGAGAAAGAATTGAGATCAACGTCAGCAAACCTGGGTGGTAA
AGGTATAAAGCAAATATGGTCTGTCGGGGGCGGAAGTTACTTTTAAAAGG
AGGTAAAGACCTGTTTTAAATGGTTGACAATCACAAAAAGGTCCTGAAAA
CGTTTCTTTTTTTAACCAATTCTAATTGTTTACACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_e22.g1 MSMg01no120_e22.g1 CHROMAT_FILE:
MSMg01no120_e22.g1 PHD_FILE: MSMg01no120_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:42 2005
         (158 letters)



>mm_chr16_64346733_64347290
          Length = 558

 Score =  284 bits (147), Expect = 1e-81
 Identities = 153/155 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   accttgcctttactaagttaaccttctagcgggaatttgccttactcaggaaaatcttga 60
           ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 accttgccttttctaagttaaccttctagtgggaatttgccttactcaggaaaatcttga 260

                                                                       
Query: 61  agagagtaacagtgcataattagagacttacagcaaggatgaagaatatcaaacctaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagagtaacagtgcataattagagacttacagcaaggatgaagaatatcaaacctaaaa 320

                                              
Query: 121 caacaaaggaaacaggaagaaggctggggtcagtg 155
           |||||||||||||||||||||||||||||||||||
Sbjct: 321 caacaaaggaaacaggaagaaggctggggtcagtg 355


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 558
Length adjustment: 8
Effective length of query: 150
Effective length of database: 550
Effective search space:    82500
Effective search space used:    82500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)