BAC Information

Click to search

BAC

Clone NameMSMg01-121E04
Chromosome16 (Build37)
Map Location 13,603,860 - 13,734,039
singlet/doubletdoublet
Overlap geneParn, LOC100043196, 3110001I22Rik, Pla2g10
Upstream geneEG622509, LOC622553, Ercc4, Gt4-1, Mkl2
Downstream geneA930007A09Rik, LOC622757, Rrn3, Ntan1, Pdxdc1, Mpv17l, Ifitm7, 2900011O08Rik, 4921513D23Rik, Nde1, Myh11, 0610037P05Rik, Abcc1, Gm1758, Snai2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121E04.T7 (MSMg01no121_e04.b1)MSMg01-121E04.TJ (MSMg01no121_e04.g1)
ACCAG331417AG331418
length787729
length of high quality
(start - end)
246 (135 - 380)284 (71 - 354)
definitionCHROMAT_FILE: MSMg01no121_e04.b1 PHD_FILE: MSMg01no121_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:59 2005CHROMAT_FILE: MSMg01no121_e04.g1 PHD_FILE: MSMg01no121_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,603,860 - 13,604,105)(13,733,756 - 13,734,039)
sequence
CCAACACCCAACTTATTTTAATTATTTTATACAACACCCATTCNNCNGTA
TAAAANACCACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCTCTGGTTTTCCCGCCTAGCCAAATTGGTGAGGTG
TGCATTCAGTAAGAGACCTTGCACTAAAAAGGCACCTGGAGGGGGTCAGT
GAGATGACTCAGTGGGTGAGTGCATTCACTGCCAAGACTGATGATCTGAA
TTCCAGCCCTAGGATGTATGTGCAGCATAACTTTCTAGAAATATACCTGC
TTTCACTTACGGTATTCAAGGTTTCTTTTAAGTTAGGAGGTAATGTATAC
TCATTTTTTAAAGACAGGAAAGCTTAGAAAACAAAAAAGAGCATCTGTCA
AATACTCAGTGGTGTGACTGAAGTAATGTCTCTGCACCAACAGCATTGAC
TGCTCTTCTAAAGAACTGGGGACAGAGGCTCACAACTGTCTGCAACTACG
GTATCAAGGGATCCGATGCTTTCTTCTGACCTCCAGGGTACTGCACACAC
ATGATGCTAACATGTGTGCTAACATAAATGCCGAGAAAACACCCCTATAG
ATTTTTTTCTGGGAATCTTAATAAAACAACCCAGTGGTAAATGCATTTTT
ATTCACTTCCATCTGATTTCCTCTATGGCGCTTTTTAAAAAGTATTATCT
AATGCCAGACCCCAATTCCATATTCTCCCCTCTAATCCAGGGTATAATAA
TGCCCCTCTTCCTGTTTAGTGGTTTTTATACTTTCCT
TGCACTTGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTATTGGCAGCAGGACCTCTGCCTAGCTGA
GTCTGTCTCTCTTCCTCCCGTGTCTTTGCTCCATGGTCCCATCACATTCC
TACGTATCTGGAAAGTTCATCTCTTACGTGGCTTGGAGAGTTTTCTTTAA
GTCCCGAGGAAGAGGAATTGCAAGATTTCTGTCCCTGACCTCATGTTCTA
TCTCAGCAGATTTCAGTCCTGGATCTAACCACCAGGGCTTTAACTAGATT
CATCAGCTTCACCCTCTGCAGCATTTCCCACGGGGCAACCCTCAACCAAT
CAGAGATTGTTATTCCACACCTTCTTTCGTTTGTTCTCCGCATGTTTATT
TAGGATACAATTTCTAGCCGAATTCCATAACAGGTCTTGCTTGCGTGAGC
TCTGCTTACCCCCACACTATAACTTGCTCTTAGCATTTCTGCCTTCCTCA
GGATCCAATTGCTTGCTCCCTGGACATACTTTACAGCCCATGTTTCTGCT
CTTGCCAAATGCCTTATCCTCTCTCTCTCATACTTGTTGCTTCTCACTCT
TTGTTCCCTTATTTCCTTGTTATTCTGCCCCCGCTTCTGCTCTCATCTAT
CATTCCCCTTATGCCTTTCTCTTGTCTCCTAACCTTACTCAAAACCTCTC
GGCTGACCTACACTTTCCCTAGTCTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_e04.b1 MSMg01no121_e04.b1 CHROMAT_FILE:
MSMg01no121_e04.b1 PHD_FILE: MSMg01no121_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:59 2005
         (246 letters)



>mm_chr16_13603660_13604305
          Length = 646

 Score =  437 bits (226), Expect = e-127
 Identities = 241/246 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaaattggtgaggtgtgcattcagtaagagaccttgcactaaaaaggcacctggagggg 60
           ||||||||||||||||||  ||||||||||||||||||||||||||||||  ||||||||
Sbjct: 201 ccaaattggtgaggtgtgggttcagtaagagaccttgcactaaaaaggcagatggagggg 260

                                                                       
Query: 61  gtcagtgagatgactcagtgggtgagtgcattcactgccaagactgatgatctgaattcc 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcagtgagatgactcagtgggtgggtgcattcactgccaagactgatgatctgaattcc 320

                                                                       
Query: 121 agccctaggatgtatgtgcagcataactttctagaaatatacctgctttcacttacggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccctaggatgtatgtgcagcataactttctagaaatatacctgctttcacttacggta 380

                                                                       
Query: 181 ttcaaggtttcttttaagttaggaggtaatgtatactcattttttaaagacaggaaagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcaaggtttcttttaagttaggaggtaatgtatactcattttttaaagacaggaaagct 440

                 
Query: 241 tagaaa 246
           ||||||
Sbjct: 441 tagaaa 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no121_e04.g1 MSMg01no121_e04.g1 CHROMAT_FILE:
MSMg01no121_e04.g1 PHD_FILE: MSMg01no121_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:59 2005
         (284 letters)



>mm_chr16_13733556_13734239
          Length = 684

 Score =  511 bits (264), Expect = e-149
 Identities = 279/284 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctattggcagcaggacctctgcctagctgagtctgtctctcttcctcccgtgtctttgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct: 484 ctattggcagcaggacctctgcctagctgagtctgtctctcttcctttggtgtctttgct 425

                                                                       
Query: 61  ccatggtcccatcacattcctacgtatctggaaagttcatctcttacgtggcttggagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ccatggtcccatcacattcctacgtatctggaaagttcatctcttacgtggcttggagag 365

                                                                       
Query: 121 ttttctttaagtcccgaggaagaggaattgcaagatttctgtccctgacctcatgttcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttttctttaagtcccgaggaagaggaattgcaagatttctgtccctgacctcatgttcta 305

                                                                       
Query: 181 tctcagcagatttcagtcctggatctaaccaccagggctttaactagattcatcagcttc 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 304 tctcagcagatttcagtcctggatctaaccaccagggctataactagattcatcagcttc 245

                                                       
Query: 241 accctctgcagcatttcccacggggcaaccctcaaccaatcaga 284
           |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 244 accctctgcagcattttccacggggcaaccctcaaccaatcaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)