Query= MSMg01no122_o02.b1 MSMg01no122_o02.b1 CHROMAT_FILE:
MSMg01no122_o02.b1 PHD_FILE: MSMg01no122_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:51 2005
(785 letters)
>mm_chr16_88594188_88595371
Length = 1184
Score = 1388 bits (718), Expect = 0.0
Identities = 769/786 (97%), Gaps = 3/786 (0%)
Strand = Plus / Minus
Query: 1 tcggttttt-ataagcatacaccctaggcacactgtgcataccccacccaactgaatcat 59
||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 984 tcggtttttaataagcatacaccctaggcacagtgtgcctaccccacccaactgaatcat 925
Query: 60 ttctgcactcattgatcgatttgccttctgacatctcaccactctgtatagaaataccat 119
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 gtctgtgctcattgatcgatttgccttctgacatctcaccactctgtatagaaataccat 865
Query: 120 gactctacaacatcttcatcagggacattgagtgagtaaattgtccactgtcacttaaat 179
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 gactctccaacatcttcatcagggacattgagtgagtaaattgtccactgtcacttaaat 805
Query: 180 gtaagaactctttttgcaaccctccgtgttcaaagtctgtgaatgaacaggtgaggcaga 239
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 804 gtaagaactctttttgcaaccctccatgttcaaagtctgtgaatgaacaggtgaagcaga 745
Query: 240 ggaaacaattttagcagcagattgcacgttaggaaagcaactcacctgccatgaagcctg 299
| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 744 gaaaactattttagcagcagattgcacgttaggaaagcaactcgcctgccatgaagcctg 685
Query: 300 gaaatcttagcttcatgacactaatgacaagcaaaactccacctccaagaagtcgtggat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaaatcttagcttcatgacactaatgacaagcaaaactccacctccaagaagtcgtggat 625
Query: 360 gtgggttgacatatggatcggagacttcagaaatgatcatctaaaactcctcccagcaat 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gtgagttgacatatggatcggagacttcagaaatgatcatctaaaactcctcccagcaat 565
Query: 420 cttagttcctttatggaatatgtatttcaatcgaggtacagatgctgaatttttcatctt 479
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 564 cttagttcctttatggaatatgtatttcaatggaggtacagatgctgaatttttcatctt 505
Query: 480 agggtacagaagttaataagcacaaaccatcttaaaatttgaaaattctgataaataaat 539
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 504 agggtacagaagttaataagcactaaccatcttaaaatttgaaaattctgataaataaat 445
Query: 540 gtaacttattttggattattccataatgatgggaaggagtaatttaaaaatggaggggaa 599
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 444 gtaacttattttggattattccataatgatgggaaggagtaattt-aaaatggaggggaa 386
Query: 600 ggtgctcattagagtcagagatgtgaggagactcactactgggacgtcaaaactttacaa 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtgctcattagagtcagagatgtgaggagactcactactgggacgtcaaaactttacaa 326
Query: 660 attattcattgtttgctcatttgtttgttttctgtgtgtctggagcttgggaaaaatatt 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attattcattgtttgctcatttgtttgttttctgtgtgtctggagcttgggaaaaatatt 266
Query: 720 tgcttccaacaactttgtttggtagttcaaagccttcctttcctccacagctgattattt 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 265 tgcttccaacaactttgtttggtagttcaaagccttcctttcctccacagctgatta-tt 207
Query: 780 ttggcc 785
||||||
Sbjct: 206 ttggcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 785
Length of database: 1184
Length adjustment: 10
Effective length of query: 775
Effective length of database: 1174
Effective search space: 909850
Effective search space used: 909850
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no122_o02.g1 MSMg01no122_o02.g1 CHROMAT_FILE:
MSMg01no122_o02.g1 PHD_FILE: MSMg01no122_o02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:51 2005
(722 letters)
>mm_chr16_88477018_88478139
Length = 1122
Score = 1381 bits (714), Expect = 0.0
Identities = 720/722 (99%)
Strand = Plus / Plus
Query: 1 gaccccagtaatccttttgatgatctctttgtctcaaacattaaatcctttcttcctgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaccccagtaatccttttgatgatctctttgtctcaaacattaaatcctttcttcctgtc 260
Query: 61 aacagcttaaaatacatacctgagctaacatcaaaaaagatgttaggtttaaggttgagg 120
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 cacagcttaaaatacatacctgagctaacatcaaaaaagatgttaggtttagggttgagg 320
Query: 121 ttacagttctaaatacagtctgtttaaaaaaaatattgtttgtgtgccataaacggcaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttacagttctaaatacagtctgtttaaaaaaaatattgtttgtgtgccataaacggcaga 380
Query: 181 gtatagaatggtttatagtctttgttaatcagaagagaaggggagtggagatggaaggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtatagaatggtttatagtctttgttaatcagaagagaaggggagtggagatggaaggag 440
Query: 241 ggacactgtgagggagggactgggaagggagcagcatttggaatgtgaattaactaacta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggacactgtgagggagggactgggaagggagcagcatttggaatgtgaattaactaacta 500
Query: 301 actaaataattaatttcgaaaatggaaaaaacaaacaaacaaacaaaacaaacaaaaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actaaataattaatttcgaaaatggaaaaaacaaacaaacaaacaaaacaaacaaaaaca 560
Query: 361 aaacctagcaaggctgattttacttaccagaccctggagttccataattaactcccatct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaacctagcaaggctgattttacttaccagaccctggagttccataattaactcccatct 620
Query: 421 ttttctaccttccttatgttgtacatcaatatgacttttctcttgtgtccaatgctgctg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttctaccttccttatgttgtacatcaatatgacttttctcttgtgtccaatgctgctg 680
Query: 481 tattcttccaagtatgcttccatgtgaacaggtggtatcttaagccccatttttgtatat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tattcttccaagtatgcttccatgtgaacaggtggtatcttaagccccatttttgtatat 740
Query: 541 ggtgtccaaacttacataaatctaaagataaggatctcatggagcagatgtctgtctccc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggtgtccaaacttacataaatctaaagataaggatctcatggagcagatgtctgtctccc 800
Query: 601 aagattttttctgataaccccctctctagagaatggagtgcacatagtaggactggtaaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aagattttttctgataaccccctctctagagaatggagtgcacatagtaggactggtaaa 860
Query: 661 aacaagtgccacagatgtggagtgcatgttctatcttccacagagcccttccctttgggc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 aacaagtgccacagatgtggagtgcatgttctatcttccacagagcccttccctttgggc 920
Query: 721 aa 722
||
Sbjct: 921 aa 922
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 722
Length of database: 1122
Length adjustment: 10
Effective length of query: 712
Effective length of database: 1112
Effective search space: 791744
Effective search space used: 791744
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
