BAC Information

Click to search

BAC

Clone NameMSMg01-122O24
Chromosome16 (Build37)
Map Location 61,735,491 - 61,736,002
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043524, LOC668183
Downstream geneLOC100043806, Nsun3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122O24.T7 (MSMg01no122_o24.b1)MSMg01-122O24.TJ (MSMg01no122_o24.g1)
ACCAG332670AG332671
length1,2881,070
length of high quality
(start - end)
38 (26 - 63)704 (83 - 786)
definitionCHROMAT_FILE: MSMg01no122_o24.b1 PHD_FILE: MSMg01no122_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:58 2005CHROMAT_FILE: MSMg01no122_o24.g1 PHD_FILE: MSMg01no122_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:58 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TACTATGGGCGCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTCCAG
GGCAAAAAGGGCTAAAGGGTGGGTAGGGCTTTGGGGTGTGGGTGTGGGCC
CTTAAAAAACCCCCCTNNNNNNCCCCCAATTTCTTTTTTTCTTATNTCTA
TTAAATATTTACTATATCTTAAAATCTTTAATATTTCATATTTTCATTCT
TATATTATATTAAAAATTTCACTCACTCTCCAATAATATTTAATACATAT
TTTAACAACATAAACATCATATAATTCTAATCTTTTCATATACATACATA
CTTTAATTTTCAAACTCCAATACAATTTTCAAATAATAACCATCATAAAC
ATTTTCAACTTCACTTTTAATTTATTAATTTACTATTACTTATTCCCTAT
TATATTTTTTTTTTTCAATTTTTATTTATTTCATACTATAATTTTTCTTA
TAAACAACCATATTTTTTTCTTCCCCCCCCCAAACTACCATTCTCTCTCC
TTCAAAAAAAAAAAAAACTTTTTCTCATTATTTTTATTTTTCAATATTCA
ATTTTACACATACACTATCTTTTCTAAATTCCATTATCACTTCTTTATAT
TTATATACTTCTTTATAACTTTTTTATTTTCTACTATTTTCCTTTTTATA
ATTATTCAACTTCATATATACTCTCTCTATCATTTATATTTTATATTTAT
TTACTTTAATATCTATTCATTATTTTTTTTAATCTATCATCATTATATAT
TAATCTACAATCATTATCTTTTATCATTCTCAATAAATCATAATCTAATA
TAATTTATATATATTCTCTAAATTCCATTTTCATACATTTCTAACTTAAA
TTTCTATCTCTATCTAAATTATAATATCCATAATTATTCATTAACATCTA
TCTATTTCTTTATATTTCATCTATAAATTAATTAATCACTATATATTATA
CATCACTAATTAACTTATATATTATATTCAATAATTTCTTAACTATCCCT
ATTAATTTACTTTTATACTCCAATATATTAATACTATATATATATTTACT
CTATTTTTTTTAATATACATATTCATTTACTATCTTTTCAATTAATATTA
ACTATTCATCATCTTCCTCTAAATTATCATTCCTCTNCACTCTACTCATA
TCTATCTAATTACATCTATATTCATTTATCATTCACATCTTTATTCCCTA
TTATCACACCAAACCCTACTCCCATATCCAAAACATATTCCTTCATATTA
TATCAATCTATACTACTCTTAATTAATCAAATTACATC
CCTTCTNTTNNTATTCATGTGATGCTGGXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTTAAAGCCATGTTGTGGTTCTTCC
TGCTAACATGCACCTTTATTGAGTTACTCATGCTCCTGCATGTAACCCCT
CACTAACGATCCTGTAAGAAACCCCAATTAACTCGTTGAGTTGATTAACT
TATTTGCCTGAACTTCTTTCTTTTGCTGATCCCAAATTAGGCTGAATAGA
CTTTCCTTCATGCCTTCCCAGAAGTGGGAGGGGGGAGGGGAAACACAGGA
AATTAGGGTTTACCCTGGCAATATATTTTCTTATTTTCTAGACGAAACTT
ACACTATATATCTATTGTATGTTGTGGAGCAATTTCATCAAATTGAAACA
TTTCCTCTCAACCTTCGTCCTTTAAATTAGACATTTTAATTGAATTTTTT
GATGTTTCTTGCAGTTATCATGTTTAAAATAACTAGAAAAAGTGTAGAAT
ATTTACCTATGTGGTCAATTTTGAAAAGTCACTATCACCAATTTTAGAAC
CATGGACAATTGTCAAATTACTACTTTGTAAAGAAATTGAAATTCTAATC
ATTAGTGTTTTAAACTAGAAATTGCCATTTCTCATAACTTCAAGATTATG
TCACAAATAGAAAAAGACATTAATTGGTTCATACGTGAGACTAATGAAGA
GGTAAAGTCAACACAGCCATGAAAAAAAGAAACATTTTATATAGCTTTTC
CCCTATGATGTTGGAATATTTTTTATTCATTTTATATCCTGATTGCAGAT
ATCTTTCCCTCATCTTTCACCAGAACTTCCTTTACATAACTCCCCAGCAC
CACACACACACACACACTATGCCTGCCCCTTCTCTTGAGGAGAAGGGGAA
AGTCCCCCCTTTGGCCCGAACCTTGCCCAAGCTTTACTTCTCCCAAATAA
GGCCCAAACAAGGGCAGCCCCAACCCAGTGTTGAATGAAAATCTCAAAAA
GTTAACCCCAAACACAGTTTTAGAAGAACAGCCCCCCCCACTTCCCAATT
TTGAAAGAACCCAAGTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_o24.g1 MSMg01no122_o24.g1 CHROMAT_FILE:
MSMg01no122_o24.g1 PHD_FILE: MSMg01no122_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:58 2005
         (704 letters)



>mm_chr16_61735097_61736202
          Length = 1106

 Score =  940 bits (486), Expect = 0.0
 Identities = 505/512 (98%), Gaps = 2/512 (0%)
 Strand = Plus / Plus

                                                                       
Query: 195 ggaggggggaggggaaacacaggaaattagggtttaccctggcaatatattttcttattt 254
           |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 395 ggagggaggaggggaaacacaggaaattagggtttaccctggcaatacattttcttattt 454

                                                                       
Query: 255 tctagacgaaacttacactatatatctattgtatgttgtggagcaatttcatcaaattga 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tctagacgaaacttacactatatatctattgtatgttgtggagcaatttcatcaaattga 514

                                                                       
Query: 315 aacatttcctctcaaccttcgtcctttaaattagacattttaattgaattttttgatgtt 374
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 515 aacatttcctctcaaccttcgtcctttaaattagacattttaattgaattttttgacgtt 574

                                                                       
Query: 375 tcttgcagttatcatgtttaaaataactagaaaaagtgtagaatatttacctatgtggtc 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tcttgcagttatcatgtttaaaataactagaaaaagtgtagaatatttacctatgtggtc 634

                                                                       
Query: 435 aattttgaaaagtcactatcaccaattttagaaccatggacaattgtcaaattactactt 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aattttgaaaagtcactatcaccaattttagaaccatggacaattgtcaaattactactt 694

                                                                       
Query: 495 tgtaaagaaattgaaattctaatcattagtgttttaaactagaaattgccatttctcata 554
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tgtaaagaaattgaaattctaatcattagtgttttaaactagaaattgccatttctcata 754

                                                                       
Query: 555 acttcaagattatgtcacaaatagaaaaagacattaattggttcatacgtgagactaatg 614
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 755 acttcaagattatgtcacaaatagaaaaagacattaattggttcatacatgagacaaatg 814

                                                                       
Query: 615 aagaggtaaagtc--aacacagccatgaaaaaaagaaacattttatatagcttttcccct 672
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 aagaggtaaagtcttaacacagccatgaaaaaaagaaacattttatatagcttttcccct 874

                                           
Query: 673 atgatgttggaatattttttattcattttata 704
           ||||||||||||||||||||||||||||||||
Sbjct: 875 atgatgttggaatattttttattcattttata 906


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1106
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1096
Effective search space:   760624
Effective search space used:   760624
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)