BAC Information

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BAC

Clone NameMSMg01-124C13
Chromosome16 (Build37)
Map Location 47,221,722 - 47,222,200
singlet/doubletsinglet
Overlap genenone
Upstream genePvrl3, LOC628757
Downstream geneLOC628776, EG667741, EG639644, EG637273
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124C13.T7 (MSMg01no124_c13.b1)MSMg01-124C13.TJ (MSMg01no124_c13.g1)
ACCAG333583AG333584
length1,2411,270
length of high quality
(start - end)
545 (79 - 623)479 (119 - 597)
definitionCHROMAT_FILE: MSMg01no124_c13.b1 PHD_FILE: MSMg01no124_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:52 2005CHROMAT_FILE: MSMg01no124_c13.g1 PHD_FILE: MSMg01no124_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTTACATTGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTC
TTTGCTCAGTTCTGAGCCCTTTTGGTTAATGGGGTTATTTGATTTTCTGA
AGTCCACCCTTTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCT
GATTTAGGGTAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGT
CTTATTGACAGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGT
CCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTC
AGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTC
CTGTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACT
TATATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTT
CTACTCGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTC
TTTCTTCCAATGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCAT
AGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACT
TGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTA
GTAAAGCTTTATGTCTGGCATGGTGATTCCGCCAGAAGTTCTTTTATCCT
TGAGAAGACTTTTTGCTATCCTAGGTTTTTTTGTTATTCCTGACAAATTT
GCCAATTGCTCCTTCCAATTCGTTGAATAATTGAGTTGTAATTTTGATGG
GGATTGCATTGAATCTGTATATTGCTTTTGGCAATATAGCCATTTTTACA
ATGTTGATTCTGCCCATCCCTGATCCTGGGAGATCTTTCCCTCCTTCCGA
AATTCTTCCTTAATTTCTTTCCTCACAAATTTTAACTTTTTTTTCATCCG
ATTTTTTCCTTTCCTTACTTAGAACCCCGCCTACAAATTTTTTTATTATT
TGGCACTATTGCCAAACGGTGTTGTTTCCCCCTAATTCTTTTCCCACCCT
GGTTTTTTCTTTGCTATTCTACATAGGCCTCTTGTCTTGGTTTCTGCTTT
CATTTTATTTTTCCGTTTCCTTTTCCCTAAATCTTGTTTTATTCATGTCT
TAAAGATTATCTCCTGCCTCAATTGTCTTTTGGGCTCCCTTTATAATTTC
ATCACTCTCCTCTTTCCTCGTCTANAATAGTTATTTCTTTT
TTTTTAAACATGGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCCCTAAAGTCTCAAATTTGACTTATTAAAGGGA
AGGTTTCTCCCTTGAAATATTGTAAGGCCTCCTGTGTGTTCAGTATCTAT
TCAACCAAGTAATCATTGTCTCCTTTTTCTCTCTGCAAAACTATCTTGAG
CTGTTTCTGTATCTTGACCTTCCTCATCTAGGATCATAAGAACATCTCAT
TCTTTTGCTTAAGCCATTCAGTTTATTTTCTGCCTTTACTGAGTATGTCT
TGTCAAATGGTGTTGCCTTTACAAAAGTAAAGTGAAAGGATTTGGGCCTG
ATCTAGCAATTTGCCTTGACTCCTGAAAGGAACTCTTCAGTATTTCCTGA
ATATGGGTTAAAATGAATGATTTGTTAGTGGAAATAATAACTGTTTTATT
AACTTTAGATATTTAAAACATTTTGGACAAAATTCTTCAAGAAAATATAG
TAAGTATAGTTACTGGGAATTCACTTGCTTGCATGGTGTATGCAATGGTG
TCAGCGTTTAGAGGCTTATTATGGGATGGATCCCCAGATATGGCAGTCTC
TAGAAGGTCCGTCCTTTCTTCTCAGCTCCCAACTTTGTCTCTGTAACTCC
TTCCATGGCTGTTTTGTTCCCAATTCTAATAAGGGGCAAAGTGTCCACAC
TTTGGTCTTCGTTCTTCTTTAGTTTCCTGAGTTTCACAAATCGGATCTTA
TATCTTGGGTATTCTAAGTATCTGGGCTAATATCCACTTATCAGTGAGTA
CATATCATTTGATTTTTTTTGTGACTGGGATTACTTCACTCAAGGATGAT
GCCCTCCCAGTCCATCCATTTTGCCTATATATTTCTTAAATTTCTTTCCT
TTTAATCACCTGAATAATTATTTCCATTTGTGTAAAATGTAACCACATTT
TTCTGAAATCCATTCCTCCGGTTGATGGGGTATATCCCGCAATAACTTCC
CCTGGGCTAAATTTCCTAAAAAAATGTCTCCACTTGTTTAATAATGTAAA
AGGAATATTCTTTAATTAATATAATTAATATTTTAAAATGGTGGCTCTCT
TTTTTAAATACCCACTCCAAAGTATCTTTGGTTTATCATCTCCTTTTATA
AAAACTAAATTATTTTGTTTCTATCACAAATTTTTGTTCTAAACCTAATA
CGGTTCATTCTATCCNCTCCTCTCTTCTAATAATTTGTTCAATATTAATA
TTCGTTCTTCTTATCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_c13.g1 MSMg01no124_c13.g1 CHROMAT_FILE:
MSMg01no124_c13.g1 PHD_FILE: MSMg01no124_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:53 2005
         (479 letters)



>mm_chr16_47221522_47222400
          Length = 879

 Score =  903 bits (467), Expect = 0.0
 Identities = 476/479 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgtaaggcctcctgtgtgttcagtatctattcaaccaagtaatcattgtctccttttt 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 attgtaaggcctcctgtgtgttcagtatctattaaaccaagtaatcattgtctccttttt 260

                                                                       
Query: 61  ctctctgcaaaactatcttgagctgtttctgtatcttgaccttcctcatctaggatcata 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 ctctctgcaaaactatcttgagctgttcctgtatcttgaccttcctcatctaggatcata 320

                                                                       
Query: 121 agaacatctcattcttttgcttaagccattcagtttattttctgcctttactgagtatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaacatctcattcttttgcttaagccattcagtttattttctgcctttactgagtatgt 380

                                                                       
Query: 181 cttgtcaaatggtgttgcctttacaaaagtaaagtgaaaggatttgggcctgatctagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgtcaaatggtgttgcctttacaaaagtaaagtgaaaggatttgggcctgatctagca 440

                                                                       
Query: 241 atttgccttgactcctgaaaggaactcttcagtatttcctgaatatgggttaaaatgaat 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 atttgccttgactcctgaaaggaactcttcagtatttcctgaacatgggttaaaatgaat 500

                                                                       
Query: 301 gatttgttagtggaaataataactgttttattaactttagatatttaaaacattttggac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatttgttagtggaaataataactgttttattaactttagatatttaaaacattttggac 560

                                                                       
Query: 361 aaaattcttcaagaaaatatagtaagtatagttactgggaattcacttgcttgcatggtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaattcttcaagaaaatatagtaagtatagttactgggaattcacttgcttgcatggtg 620

                                                                      
Query: 421 tatgcaatggtgtcagcgtttagaggcttattatgggatggatccccagatatggcagt 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatgcaatggtgtcagcgtttagaggcttattatgggatggatccccagatatggcagt 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)