BAC Information

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BAC

Clone NameMSMg01-125E11
Chromosome16 (Build37)
Map Location 11,158,749 - 11,158,964
singlet/doubletsinglet
Overlap geneZc3h7a
Upstream gene4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi, 4932416N17Rik, Socs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik, Litaf, LOC100043147, LOC100042597, Snn, Txndc11
Downstream geneLOC665450, LOC622271, Rsl1d1, Gspt1, Tnfrsf17, 4933437K13Rik, LOC100043171, C530044N13Rik, 2700045P11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-125E11.T7 (MSMg01no125_e11.b1)MSMg01-125E11.TJ (MSMg01no125_e11.g1)
ACCAG334412AG334413
length685759
length of high quality
(start - end)
221 (32 - 252)37 (92 - 128)
definitionCHROMAT_FILE: MSMg01no125_e11.b1 PHD_FILE: MSMg01no125_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:16 2005CHROMAT_FILE: MSMg01no125_e11.g1 PHD_FILE: MSMg01no125_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:37:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCTGAGAGA
TAAGTTTTGCTTACCTCAGCTCTAAATATGCTTTCCTTATTTTAAATCCC
AATTTCTGAGCTAATTCTTGAGTTAATTTTATTACATGTTCATCCTGGAA
AGAGCAACATTCATGAATGTATCTGTAGTGAAGCAAGTAAGCAGGGCTGT
GACACTGCTCTCTGGATCCTTGCTTTGCTAGCTATTACAGTCAACTGAAG
TGAGCTGAAGGCTGCACGTAAATGTGGCTATTTCTCCACGTGAGATCCGT
ACAATACTTTTGATGCCCACCAACAAGCTAAAGCATTAACCCATATCCTA
GTTTCCCCCCCCCCCCCCTTTGCTATTAGTGTTTATATATTTTCTGTATT
GCCCTAAAAAAAAAAAAAAATTAGGCGGCGGGGGGGGAGCCTTGCAGTTA
CTGGTTATTACCCTGATTACTGCATTATCATCTTCTAACCCTTCCTTCCC
GACCCCCCGCTACCGCCACCCTTAAGACACTGTCACACTCCCCCCTTCCC
ATCTTATCCTATATCACGCTCCTTAATACACCACCCTTTCACCCCCCCCC
TTCCTTCCCCCTTTCCTCATTCCCTCCCCCCCCCTTCTTCCTCTCTATTT
TTCGCTCCCAACCCCCCCCTCTATCTTCCACCCCC
NAAAAGGTCNAAAAACGATGTAGTGAGXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGATGCACCT
GTCTCTGCCTCCTGAGTGCTACGCAGGGTATGTCCCCCACTTTTAATCCC
AACAGTCAAGAGGAACAAGCACGTTCTTGAGATGCCAGCTAGCCTGTTTA
CCCATTCAGCTCTAGGAACCGTGTCCTTGATAAACAAAACCAAGCAAAAC
AGATTTTTAATGTTACCTATGTAAAGAATGTCGTGAAGGACAGTTATATC
AGTTCCACCCTGATCTGGTCCTTCTCCCTGTCATCCATGTTTCTGAACCG
CTATATTGCTGGCATTGCTCCAAAATTTTTATGTTTTTTCCCCCCCCCCC
CCTGTGGACCCCATTTTTTTGTAGATGTTGGTGAATACCATGTAAAAAAA
AAAAAACCCTTGCGGGGGGGGGGGGCCCTCTCCCTTTTGCCCTACACACC
ATTACTCCTCCATCACCCTAATGCTCCCCCCCCCTAACAACACATTACCC
CTTTCCCGCCTTTTATATTCCCCCTCCCGCCCCACAGTCTACTGTCTAGC
CTTTCCCACGATTTACCCACTGCGCCCACTCAACTTTTCCACATCGTTTT
CAAACCCACCATACCCCATCACTTACCTCCCTCGCCTATAACTCCGCATG
CCACCCCGATTGTCTGTTTGCGCACACCGTTCGCACCCTGCCCTCACCCT
CCCCACTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no125_e11.b1 MSMg01no125_e11.b1 CHROMAT_FILE:
MSMg01no125_e11.b1 PHD_FILE: MSMg01no125_e11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:16 2005
         (221 letters)



>mm_chr16_11158543_11159164
          Length = 622

 Score =  402 bits (208), Expect = e-117
 Identities = 214/216 (99%), Gaps = 1/216 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctgagagataagttttgcttacctcagctctaa-atatgctttccttattttaaa 65
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 207 gaattctgagagataagttttgcttacctcagctctaacatatgctttccttattttaaa 266

                                                                       
Query: 66  tcccaatttctgagctaattcttgagttaattttattacatgttcatcctggaaagagca 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tcccaatttctgagctaattcttgagttaattttattacatgttcatcctggaaagagca 326

                                                                       
Query: 126 acattcatgaatgtatctgtagtgaagcaagtaagcagggctgtgacactgctctctgga 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 acattcatgaatgtatctgtagtgaagcaagtaagcagggctgtgacactgctctctgga 386

                                               
Query: 186 tccttgctttgctagctattacagtcaactgaagtg 221
           ||||||||||| ||||||||||||||||||||||||
Sbjct: 387 tccttgctttgttagctattacagtcaactgaagtg 422


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 622
Length adjustment: 9
Effective length of query: 212
Effective length of database: 613
Effective search space:   129956
Effective search space used:   129956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)