Query= MSMg01no125_j14.b1 MSMg01no125_j14.b1 CHROMAT_FILE:
MSMg01no125_j14.b1 PHD_FILE: MSMg01no125_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:41 2005
(494 letters)
>mm_chr16_6450698_6451591
Length = 894
Score = 955 bits (494), Expect = 0.0
Identities = 494/494 (100%)
Strand = Plus / Plus
Query: 1 ttgttcatttcctactgtgctttctggtcatttgtatattttattttgcactccttttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgttcatttcctactgtgctttctggtcatttgtatattttattttgcactccttttta 260
Query: 61 tccccacccctctatcaaccttctctcctctctacccagcatttccttcttctctcccgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccccacccctctatcaaccttctctcctctctacccagcatttccttcttctctcccgc 320
Query: 121 agactcccagtccctctttcctctcttgctctccctccccttgccctttctcaggctcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agactcccagtccctctttcctctcttgctctccctccccttgccctttctcaggctcct 380
Query: 181 ttgctttcgagggtctctatgcagctgaggatgaccttgaagttcttatcttgcctctgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgctttcgagggtctctatgcagctgaggatgaccttgaagttcttatcttgcctctgc 440
Query: 241 ttccctacatatggcgttacagacatgcactactacagactgctttatgtattactgaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttccctacatatggcgttacagacatgcactactacagactgctttatgtattactgaga 500
Query: 301 acagagaccaggactccatgcatactactcatgcactgggccatatgagcttggccccag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagagaccaggactccatgcatactactcatgcactgggccatatgagcttggccccag 560
Query: 361 cttcattaacatattttatgtacagaaatgaacatttgggctctttgtttccaattccat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttcattaacatattttatgtacagaaatgaacatttgggctctttgtttccaattccat 620
Query: 421 tgttcgttttggtgtttaggtatatatacatatatatatatgtatatatatatgttaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgttcgttttggtgtttaggtatatatacatatatatatatgtatatatatatgttaaat 680
Query: 481 gtattatcaaacac 494
||||||||||||||
Sbjct: 681 gtattatcaaacac 694
Score = 58.7 bits (30), Expect = 9e-13
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 441 tatatatacatatatatatatgtatatata 470
||||||||||||||||||||||||||||||
Sbjct: 670 tatatatacatatatatatatgtatatata 641
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no125_j14.g1 MSMg01no125_j14.g1 CHROMAT_FILE:
MSMg01no125_j14.g1 PHD_FILE: MSMg01no125_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:37:42 2005
(279 letters)
>mm_chr16_6606914_6607591
Length = 678
Score = 501 bits (259), Expect = e-146
Identities = 274/279 (98%), Gaps = 1/279 (0%)
Strand = Plus / Minus
Query: 1 tatgcataccgaagtggctttacattctcagagactgccctctcactgctatgattaagt 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 478 tatgcataccgaagtggctttacattcacagagactgccctctcactgctatgattaagt 419
Query: 61 cttgtctgtgccctggactactcactgtccgtacctgcccttggcgagttgaaggtgaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cttgtctgtgccctggactactcactgtccgtacctgcccttggcgagttgaaggtgaag 359
Query: 121 tggcacagagtcaataacagagactctgggagcagatgataatcaccatcagcaagctct 180
|||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 358 tggcacagagtcaacaacagagactctgggagcagatgagaatcacca-cagcaagctct 300
Query: 181 ctgaacattgctgcaagctttttaaatatactccaccagcatcccactggtcccaagaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ctgaacattgctgcaagctttttaaatatactccaccagcatcccactggtcccaagaaa 240
Query: 241 gtatgtcttctaaacaaaaaaagtttctgattggctggc 279
| |||||||||||||||||||||||||||||||||||||
Sbjct: 239 gcatgtcttctaaacaaaaaaagtttctgattggctggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 678
Length adjustment: 9
Effective length of query: 270
Effective length of database: 669
Effective search space: 180630
Effective search space used: 180630
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
