BAC Information

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BAC

Clone NameMSMg01-127A20
Chromosome16 (Build37)
Map Location 89,030,995 - 89,031,302
singlet/doubletsinglet
Overlap genenone
Upstream geneGrik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201
Downstream geneKrtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-127A20.T7 (MSMg01no127_a20.b1)MSMg01-127A20.TJ (MSMg01no127_a20.g1)
ACCAG335704AG335705
length718712
length of high quality
(start - end)
312 (35 - 346)484 (75 - 558)
definitionCHROMAT_FILE: MSMg01no127_a20.b1 PHD_FILE: MSMg01no127_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:40 2005CHROMAT_FILE: MSMg01no127_a20.g1 PHD_FILE: MSMg01no127_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:39:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCCACT
GATACAAAAACTACCTGGATTTTGTGTGAATTTATTAGGAGGATTCATTA
TCACACAAAACCCACTGGGATCTGAGACAATTACAAAACATTCAAAGCTC
ATCATATGCTGTCAAAAACAGAATAATTCTGGCACTACTAGTTAAAGAAA
GAGTAGTTGACTGAAGTAATTTGATCAATGTAAATACATGATGGTAAACT
CATTGTATAGTGCTGTACATAAAATATAATTCTAGTATTCATTAAAGTAT
TGAATAATCACCGTGCACTTATTTGTAAAAATAAATGGAGAAATAATATC
TTATTTACCCCCCCCAACCATTTGCTTTATAGAAATTAAATTCAAATGGG
ACCCCCCCCATCTGTATAACAATAAAACGTAATGCATTTAGCTCATAGTT
CATTTTCTAAAATACTAATTAGTTAGAATATTATTACCATCAAGGGAATG
AAAAATATGTTTGATTTCAGAAAAGGAAAAGAATTGAACCCTGAAGCAGA
AAATGAATTTGCATTGCAAGTGAAGAAAAATTCATGATTCAAAGAGAATG
TATGGCTTTTTTGTAATCGAGATACATAAAAAATTTTGACTAAGAAAATG
TCACCTCTGCATATAGTATAGTCTTAGAAGGTTAAAATGGAAGCATTGTT
TGCTTCACAATTCTCAAG
NACGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGACCAGCGGGGTCTCATAGACCTA
CAAATATTACAGGCTATGGGCAATACTATTGTTCACTTCCATAACTTGAT
CAAAAATGCCCGGTGCTGAAGACTTAGTTGAGCCATTGAACATGGATAAC
TCAGGCTTTTCCTGACCTCATAGCTTCACCCTCATTGTGTAGCTTTTGTT
GTGCTGAATGTACACAAATGGAAGGTAAAACACCTGTGCACAGCTGTAAT
AGGGACATGAAGAGTTTGAGAGTTATATACCCCTTTCTGATTGAATTTAA
GTTCATAAGACAGATGGAACCCAACTTGGTACCATTATTTGTACAAGATC
CTGCAAACAGACTCTAACCCCCCACTCCTACTACTAATGTTCTGATAAAG
AGATCCAGAATTTTTTAAAGAAAAGCTCTTAAGGATATTTATATATTTTT
ATATTAGAGAACCTCTCAACTTTGAGCAGAGGAATGCCAATTTGGAGCGT
ATTGTGATTATCAGAGACCTCATACTGGACAAAATGCACACTAAGGGTGT
GGTATTCTCGCCTCTACTACAGCAAACAACAGACGACTACTATGCATCTC
TGTTTCCCAGACACAGTGGGGAGCTGTTCTTATGAACTCACAGAGACTGT
GAGGAATATGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no127_a20.b1 MSMg01no127_a20.b1 CHROMAT_FILE:
MSMg01no127_a20.b1 PHD_FILE: MSMg01no127_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:39:40 2005
         (312 letters)



>mm_chr16_89030789_89031502
          Length = 714

 Score =  518 bits (268), Expect = e-151
 Identities = 298/308 (96%), Gaps = 2/308 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattccactgataca-aaaacta-cctggattttgtgtgaatttattaggaggattcat 64
           |||||||||||| | | ||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 207 gaattccactgaaaaataaaactaccctggcttttgtgtgaatttattaggaggattcat 266

                                                                       
Query: 65  tatcacacaaaacccactgggatctgagacaattacaaaacattcaaagctcatcatatg 124
           |||||||||||||| | ||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 267 tatcacacaaaaccaaatgggagctgagacaattacaaaacagtcaaagctcatcatatg 326

                                                                       
Query: 125 ctgtcaaaaacagaataattctggcactactagttaaagaaagagtagttgactgaagta 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 327 ctgtcaaaaacagaataattctggcactactagttaaagaaagagtagttgacttaagta 386

                                                                       
Query: 185 atttgatcaatgtaaatacatgatggtaaactcattgtatagtgctgtacataaaatata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atttgatcaatgtaaatacatgatggtaaactcattgtatagtgctgtacataaaatata 446

                                                                       
Query: 245 attctagtattcattaaagtattgaataatcaccgtgcacttatttgtaaaaataaatgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 attctagtattcattaaagtattgaataatcaccgtgcacttatttgtaaaaataaatgg 506

                   
Query: 305 agaaataa 312
           ||||||||
Sbjct: 507 agaaataa 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 714
Length adjustment: 9
Effective length of query: 303
Effective length of database: 705
Effective search space:   213615
Effective search space used:   213615
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)