BAC Information

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BAC

Clone NameMSMg01-128K24
Chromosome16 (Build37)
Map Location 40,307,305 - 40,307,564
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667400
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128K24.T7 (MSMg01no128_k24.b1)MSMg01-128K24.TJ (MSMg01no128_k24.g1)
ACCAG336891AG336892
length711687
length of high quality
(start - end)
278 (46 - 323)551 (69 - 619)
definitionCHROMAT_FILE: MSMg01no128_k24.b1 PHD_FILE: MSMg01no128_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:52 2005CHROMAT_FILE: MSMg01no128_k24.g1 PHD_FILE: MSMg01no128_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGATAATCCGCGG
AATTCTAAGGGCATTGCCCCCTACCCACAAAGCTTTTGAAAAAACACAAG
GAAAGAGAAGAGGGAAGCAATATAACTGTGTTTTAATTACAATTCTAAAA
ATATCAAGAAACAACTATAAATATTTTTAAATTATATATATGTATGTGTA
TATATATATATATATATATATATATATATATATAATACACACACATATAC
ATATTTCTGTCACTATGGAGGAACATGCCTGTGTGAGTGCTGATGACCCC
AGGGTCTAGAGGATGGCATCAGATACCTTGTAACTGAAGTCCCTAAAGGT
TGTGAATGCCAGGAACCAATGTGGCTGTTCTCTCCAAGAGCGGGGTATAC
TCTTTAAAAACAAAACAAAACACACAAAACAAAACAAAAACAAAAACAAC
CAAAACAAAACCAAACAAACAAACCAACCAAAAAAACAAAAACTAGATAT
TTATTTACATTTCAAATGTTATCCCCTTTCCTATTTTCCCCTCTGAAAAC
TCCCTATCCCCTCCCCCTCCCCCTACTCACCAACTCATCCATTCCCTAGC
ATTTCCCCTACACTGGAGCATAGAGACTTCACAGGACCATGGGCCTCTCC
TCCCATTTATGACCAACTAGTCCATCCTCTGCTACATATGCAGCTTGAGC
CAGGAGTCCCT
NCCCCGATGCAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTCCCCGAAATTCATGAAATTCACAAACAAATGGACGGATC
TAGAAAATATCACCCTGACTGCCGTAACTCAGTCACAAAAGAACACACAT
GATGTGTACTCAGTGATAACTGGATATTAGTCAAAGAGCATGGAATACCA
CTATATAATTCACTGAGCACATGTAGCTCAAGAGGAAGGAAGACAAATAA
GTGGATGCTTCACTCCTACTTAGAAGTGGGAACAATATAATCAAGGGAAG
TAGAAGGTGGGAGGGACTTGTGATGAAGAGAGGATGGGAGAGGAAAAATA
TGGGCAGAATCCGGTATGGGAGGAGATGGAGGAGATATACATAGGGTCAG
GAAATTGAACAGAGCCATGTAGCAATGGGGCATGGGGAACTTGGAGTAGC
AACCAGAAAGTCCCAGATGCAAGGAAAGCAAGATCCTCCAAGGACCCCAT
GAGGATGGCAGTATCTGAAATACCCCACAAAGGTGAGGGAGAACCTGTAG
AGACCATATCTAGAGGTTAGGTATGACCCCCTTAAGGGATGGGGCCACTC
ACCCATCTCCAAAATTTAAACCCAGAGTTGCTCCTGTCGAAAAGAAATAC
AGGGACAAAGAGTGGAACAGAGACTGAAGGAAAGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_k24.b1 MSMg01no128_k24.b1 CHROMAT_FILE:
MSMg01no128_k24.b1 PHD_FILE: MSMg01no128_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:52 2005
         (278 letters)



>mm_chr16_40307228_40307905
          Length = 678

 Score =  422 bits (218), Expect = e-122
 Identities = 254/278 (91%), Gaps = 22/278 (7%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaagggcat--tgccccctacccacaaagcttttgaaaaaacacaaggaaagag 62
           |||||||||||||||  ||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gaattctaagggcatggtg--acctacccacaaagcttttgaaaaaacacaaggaaagag 280

                                                                       
Query: 63  aagagggaagcaatataactgtgttttaattacaattctaaaaatatcaagaaacaacta 122
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 aagagggaagcaatataattgtgttttaattacaattctaaaaatatcaagaaacaacta 220

                                                                       
Query: 123 taaatatttttaaattatatatatgtatgtgtatatatatatatatatatatatatatat 182
           ||||||||||||||||||||||||                ||||||||||||||||||||
Sbjct: 219 taaatatttttaaattatatatat----------------atatatatatatatatatat 176

                                                                       
Query: 183 atatataatacacacaca--tatacatatttctgtcactatggaggaacatgcctgtgtg 240
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 atatataatacacacacacatatacatatttctgtcactatggaggaacatgcctgtgtg 116

                                                 
Query: 241 agtgctgatgaccccagggtctagaggatggcatcaga 278
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 115 agtgctgatgaccccagggtctagaggatggcatcaga 78



 Score = 76.1 bits (39), Expect = 2e-18
 Identities = 49/55 (89%), Gaps = 5/55 (9%)
 Strand = Plus / Plus

                                                                  
Query: 142 tatatgtatgtgt-----atatatatatatatatatatatatatatatatataat 191
           ||||||| |||||     |||||||||||||||||||||||||||||||||||||
Sbjct: 152 tatatgtgtgtgtgtattatatatatatatatatatatatatatatatatataat 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 3
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)