BAC Information

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BAC

Clone NameMSMg01-129H01
Chromosome16 (Build37)
Map Location 27,192,617 - 27,192,872
singlet/doubletsinglet
Overlap genenone
Upstream geneCldn1, Cldn16, LOC100043057, Il1rap, Gm606
Downstream geneOstn, Uts2d, Ccdc50, Fgf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129H01.T7 (MSMg01no129_h01.b1)MSMg01-129H01.TJ (MSMg01no129_h01.g1)
ACCAG337448AG337449
length707709
length of high quality
(start - end)
256 (65 - 320)246 (71 - 316)
definitionCHROMAT_FILE: MSMg01no129_h01.b1 PHD_FILE: MSMg01no129_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:50 2005CHROMAT_FILE: MSMg01no129_h01.g1 PHD_FILE: MSMg01no129_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
TTATATCCCTGTGTATGTTTTCCTAGATTTAACTCAATAGCTCCTGACCT
GGAAAATAATTTAGCCCGTTTGCCAAACCTTTTTTAGTCTAAATATTACT
TGGAACAGCACATGGCGACTGTAGAATTGTCTGTCTTCCTTATAATGTGT
TAAAAAGCTGATTCATTTGCAGTGTTTGTCTTTACTGTTCAGATTGTATT
TCTTCAAACATCTGTGTGCTTCATAAATGTATATTTATTGACACATAAAA
CCGGAATTTACAATTTTAGGGGGCTCGTCTTGAACAAAAATACATTCTGG
TTATCTCTGGACACAACACCCGACACAAATTACAACTTCCCCATCTTTAC
ATTCTTATTATCCAAGCCACAAAACATTCTGTGTGCTTTTCTGAATCCAC
TGGATACATATTCACAGTTTTCTACCTGACAGCCACATCACTGCCATGTC
CTTGGGTTAATCTCTCTTTTTCCTTATTACTCATCTTCTTTAAGGCCACC
CTACTAAATAAGCTTTATTGTATCCATATGTTCCACCACAAGTCTCTGGT
CCCCCCACCTACCAGATGACATATAGCACCCCTTCTCTGGTTATGCTTCA
CCCCTCCATAGACCTCCCTGCTTCCTTCCATGTTCCTACCCCCCTTTACA
CCTCACG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG
CACCTGAAAAAATGTTCACCATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAA
CTTCAGTTGATAGCAGATGCTTGCGTGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGT
CTGGCGGTTCCTCAGGAATTTGGACATAGTACTACCGGAGGATCCAGCAA
TACCTCTCTTGTGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGAC
ACATGCTCCACTATGTTCATAGTAGCCTTATTCACAATAGCCAGAAGCTG
GAAAGAACCCCGATGCCCCTCAACAGAGGACTGGATACAGAATATATGGT
ACTTCTACACAATGGAGTACTACTCAGCTATTAAAAACAACGATTTTACG
AAATTCCTATCCTAACGGCAGGACCTGTCGGGCATCATCCTGAGTGACGT
ACTTCTTTCTCACAGGGACTTCTTCAATTATGTACTCACTGATAAGTGGA
TATTATTCTTAAACCTTGGATATCCTAAGACTCTTTACCCCATTTGCTAC
ACTCCTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_h01.b1 MSMg01no129_h01.b1 CHROMAT_FILE:
MSMg01no129_h01.b1 PHD_FILE: MSMg01no129_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:50 2005
         (256 letters)



>mm_chr16_27192417_27193072
          Length = 656

 Score =  464 bits (240), Expect = e-135
 Identities = 252/260 (96%), Gaps = 8/260 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgttttcctagatttaactcaatagctcctgacctggaaaataat----ttagcccgtt 56
           ||||||||||||||||||||||||||||||||||||||||||||||    |||    |||
Sbjct: 456 atgttttcctagatttaactcaatagctcctgacctggaaaataatgaagtta----gtt 401

                                                                       
Query: 57  tgccaaaccttttttagtctaaatattacttggaacagcacatggcgactgtagaattgt 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tgccaaaccttttttagtctaaatattacttggaacagcacatggcgactgtagaattgt 341

                                                                       
Query: 117 ctgtcttccttataatgtgttaaaaagctgattcatttgcagtgtttgtctttactgttc 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ctgtcttccttataatgtgttaaaaagctgattcatttgcagtgtttgtctttactgttc 281

                                                                       
Query: 177 agattgtatttcttcaaacatctgtgtgcttcataaatgtatatttattgacacataaaa 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 agattgtatttcttcaaacatctgtgtgcttcataaatgtatatttattgacacataaaa 221

                               
Query: 237 ccggaatttacaattttagg 256
           ||||||||||||||||||||
Sbjct: 220 ccggaatttacaattttagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space:   159809
Effective search space used:   159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)