BAC Information

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BAC

Clone NameMSMg01-129M09
Chromosome16 (Build37)
Map Location 75,341,450 - 75,341,903
singlet/doubletsinglet
Overlap genenone
Upstream geneRobo2, LOC665042
Downstream geneD930038D03Rik, Rbm11, Stch, LOC546667, Samsn1, 4930578N18Rik, LOC100039457, Nrip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129M09.T7 (MSMg01no129_m09.b1)MSMg01-129M09.TJ (MSMg01no129_m09.g1)
ACCAG337696AG337697
length726729
length of high quality
(start - end)
601 (46 - 646)323 (77 - 399)
definitionCHROMAT_FILE: MSMg01no129_m09.b1 PHD_FILE: MSMg01no129_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:18 2005CHROMAT_FILE: MSMg01no129_m09.g1 PHD_FILE: MSMg01no129_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCAGATTTCCTCATGATGGGGACCTTTGGGCATGATTATATTAA
AATGCTTTTACTGCCCATAAACAGAATTCTATAAGAAATGGTTGTTCATT
GGGACCTAGCAGGAAGTGTCAGCATCAATATGCCTAAACATGTGACAATG
AACTATAAAGTCCACATTCTTAGACCTCAGCTAAACCAAGTCTAATATAC
AGATCACCATGCTGTTATTGCAGCAAAGAATTCCTAATTTTTGAATGTTC
AAAGACACAACAAGAAATCCAACAGAATCAACTAACCTGGGCCCATAGAG
GGCCATATAAACTGAACCCCCAGCCAGAAAGCATGCATAAAACAGACCTA
GCCCTCCCTGCCCCCACATATATAACAGACAACTTGGTCTGCATGTAGGT
CCCCAAACAGCAGGGACTGCCACTGCCTCTTTCCTGCCTTTGGATCCATT
TCCTTAACTTGCTGCCTTGTCTAGCCTCAATAGGAGATTTGCCTAATCAT
ACTGCAACTTAATATATGTCAAGGTGGGCTGATACCCATGGGAGGCCTCT
GCTTTTCTGAGGAGAAAGGAAGGAGGGAGGTATGGGGAGGCAAAGTCGCG
GTAGAGGGTACTGTGTACGCGACTTCTTCTCTCCCTTTTTCCTTTCTCTT
TTCTACCTATCCCCCCCCCTCCTCTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACAAAAAACCAGAAACAGTGAAA
CTTATAGAGGAGAAAGTGGGGAAAAGCCTCGAAGATATGGGCACAGGGGA
AAAATTCCTAAATAGAACAGCAATGGGTTGTGCTGTAAGGTTGAGAATTG
ACAAATGGGACCTCATAAAATTTCAAAGCTTCTGTGAGGCAAAAGACACC
GTCAATAAGACAAAAAGGCCACCAACAGTTTGGGAAAGGATCTTTACCTT
TCCTAAATCAGATAGGGGACTAATATACAATATATATATATATATATTGT
ATATTAGTCCCCTATCTGATTTATATATGTATTATATATATATAAAGAAT
GTAAGAAGGTGGTACTCCACACCATCAAATAACCCTATTAAGAAATGGGG
CTCAGAGCCATACAAAGAATTCTCACCTGAGGAATACCGAATGGCTGAGG
AACACCTGAGTAAATGTTAAGCATCCTTAATCATGTGGGAAATGCAAATC
AAAACAACCCTGATATTCCATCTGACACCTTTCAGAATGGGTAAGATCAA
AAATTCAGGTGACATCAGATGCTGGCGTGCATGTGTATAAAGAGGAACAC
TCCCCGCTTGTTGGTGGTATTGCAAGATTGTACAAGTATCTCTGGACATC
ATACCGGCAGTTCCTCAGAAATTTGGACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_m09.b1 MSMg01no129_m09.b1 CHROMAT_FILE:
MSMg01no129_m09.b1 PHD_FILE: MSMg01no129_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:18 2005
         (601 letters)



>mm_chr16_75341450_75342450
          Length = 1001

 Score =  839 bits (434), Expect = 0.0
 Identities = 449/454 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcagatttcctcatgatggggacctttgggcatgattatattaaaatgctttt 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gaattcatcagatttcatcatgatggggacctttgggcatgattatattaaaatgctttt 395

                                                                       
Query: 65  actgcccataaacagaattctataagaaatggttgttcattgggacctagcaggaagtgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 actgcccataaacagaattctataagaaatggttgttcattgggacctagcaggaagtgt 335

                                                                       
Query: 125 cagcatcaatatgcctaaacatgtgacaatgaactataaagtccacattcttagacctca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 334 cagcatcaatatgcctaaacatgtgacaatgaactataaagtccacattcttaaacctca 275

                                                                       
Query: 185 gctaaaccaagtctaatatacagatcaccatgctgttattgcagcaaagaattcctaatt 244
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 274 gctaaaccaagtctaatatacagattaccatgctgttattgcagcaaagaattcctaatt 215

                                                                       
Query: 245 tttgaatgttcaaagacacaacaagaaatccaacagaatcaactaacctgggcccataga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 tttgaatgttcaaagacacaacaagaaatccaacagaatcaactaacctgggcccataga 155

                                                                       
Query: 305 gggccatataaactgaacccccagccagaaagcatgcataaaacagacctagccctccct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 gggccatataaactgaacccccagccagaaagcatgcataaaacagacctagccctccct 95

                                                                       
Query: 365 gcccccacatatataacagacaacttggtctgcatgtaggtccccaaacagcagggactg 424
           |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 94  gcccccacatatataacagaaaacttggtctgcatgtgggtccccaaacagcagggactg 35

                                             
Query: 425 ccactgcctctttcctgcctttggatccatttcc 458
           ||||||||||||||||||||||||||||||||||
Sbjct: 34  ccactgcctctttcctgcctttggatccatttcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)