Query= MSMg01no130_f08.b1 MSMg01no130_f08.b1 CHROMAT_FILE:
MSMg01no130_f08.b1 PHD_FILE: MSMg01no130_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:04 2005
(286 letters)
>mm_chr16_87741928_87742613
Length = 686
Score = 538 bits (278), Expect = e-157
Identities = 284/286 (99%)
Strand = Plus / Plus
Query: 1 ccattccatctccttcctcctgacccttctcacaggaaggtgcgcccctcttccgaaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccattccatctccttcctcctgacccttctcacaggaaggtgcgcccctcttccgaaccc 260
Query: 61 tttgcctccctcctttcagcagttccccctattctcatttcttccagtactggatggaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgcctccctcctttcagcagttccccctattctcatttcttccagtactggatggaac 320
Query: 121 tccgagttttgcttgctaagtaaacactgtcttgagctttatccgccatcctctttctag 180
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 321 tccgagttttgcttgctaagtaaacactgtcttgagctttatccgccgtcccctttctag 380
Query: 181 ttgttttgagattagtgtctccctaagtggactgaattggccttgaactcactctgtatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgttttgagattagtgtctccctaagtggactgaattggccttgaactcactctgtatc 440
Query: 241 ccaggcaaggctttgaatttgtgattctcctgctcaatctcttaag 286
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaggcaaggctttgaatttgtgattctcctgctcaatctcttaag 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no130_f08.g1 MSMg01no130_f08.g1 CHROMAT_FILE:
MSMg01no130_f08.g1 PHD_FILE: MSMg01no130_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:04 2005
(633 letters)
>mm_chr16_87839563_87840595
Length = 1033
Score = 893 bits (462), Expect = 0.0
Identities = 498/510 (97%), Gaps = 2/510 (0%)
Strand = Plus / Minus
Query: 125 atgaccttcctggcacatatagcaaagaatggccacaggaagatacagagaggaaatcgg 184
|||||| |||||||||||||||| | | ||||||| ||||||||||||||||||||||||
Sbjct: 1033 atgaccctcctggcacatatagcgagggatggccataggaagatacagagaggaaatcgg 974
Query: 185 tatcttctgggggccaaa-gagcaatctcactaacacccggctctgagttctcagcctcc 243
||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 973 tatcttctgtgggccaaacg-gcaatctcactaacacccggctctgagttctcagcctcc 915
Query: 244 tgaagttgtagaacataaatttatgccgtggaagccacccagtctgtaacagtctgtgat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 tgaagttgtagaacataaatttatgccgtggaagccacccagtctgtaacagtctgtgat 855
Query: 304 agtaccccaacatgactaagatgcttgatgagtattttttgatcctagctgggtttctca 363
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 854 agtaccccaacatgactaagatgcttggtgagtattttttgatcctagctgggtttctca 795
Query: 364 cattctcttcagctcccaggatacaccctaacctaaagctctccctgttgggatcttgtc 423
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 794 cattctcttcagctcccaggatacaccctaacctaaagatcttcctgttgggatcttgtc 735
Query: 424 tttctgtgcagccttcttgggcgagacgctagcagaaccccatgcaacagatggctcatg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tttctgtgcagccttcttgggcgagacgctagcagaaccccatgcaacagatggctcatg 675
Query: 484 agaatagcaccttggcattttgtgtcctaagacagataggcaggagccagtcctaaggct 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 agaatagcaccttggcattttgtgtcctaagacagataggcaggagccagtcctaaggct 615
Query: 544 ttttgcttccattcagaaactgactgaccagccagccctgtctctcagttcactccatga 603
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ttttgcttccattcagaaattgactgaccagccagccctgtctctcagttcactccatga 555
Query: 604 aacctataaagcatcatttccctctggcct 633
||||||||||||||||||||||||||||||
Sbjct: 554 aacctataaagcatcatttccctctggcct 525
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
