BAC Information

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BAC

Clone NameMSMg01-130I04
Chromosome16 (Build37)
Map Location 80,328,098 - 80,328,424
singlet/doubletsinglet
Overlap genenone
Upstream geneEG383172, 1700066C05Rik
Downstream geneLOC621365, LOC100039724, Ncam2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130I04.T7 (MSMg01no130_i04.b1)MSMg01-130I04.TJ (MSMg01no130_i04.g1)
ACCAG338246AG338247
length7121,184
length of high quality
(start - end)
324 (44 - 367)327 (121 - 447)
definitionCHROMAT_FILE: MSMg01no130_i04.b1 PHD_FILE: MSMg01no130_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:20 2005CHROMAT_FILE: MSMg01no130_i04.g1 PHD_FILE: MSMg01no130_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAGGCCCATATTTACCCATAATAAAAGCAATCTACAGCAAACCAGTA
GCCAACATCAAAGTAAATGGAGAGAACCTGGAAGCAATCCCACTAAAATC
AGGGACTAGACAAGGCTGCCCACTTTCTTCCTACCTTTTCAACATAGTAC
TTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATA
CAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGAT
AGTATATATATGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGA
TAAACAGCTTTGGTGAAGTATTTGGACCCCCCACCCACCTCAAACAAGTC
AATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGG
AAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGTG
ACTCTAACTAAGGAAGTAAAAGATCTGTATGATAAAAACTTCAAGTCTCT
GAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCT
CATGGATTGGCAGGATCAACATTGTAAAAATGGCAATCTTGCCAAAAGCA
ATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAA
CGAATTAGAAGG
CCCCTCCTCACGTGAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTAACCTCCACTGTACAACACTTATTTTCCT
TCTAGAGCATATAAGAGTTCACCCATTATATGTGATATTGCTCTGTTTTA
TTTTATGTTGTGTTCCTGTTTAGAAAATATGCTCCTTAAATTCCTGTTCT
TGAATAGCTCCCTTTATAATCTGCTTTTCCATTTTACCATTTGGGGACCC
ACTAGGCTCACAAGGAGGCTGGAGACAAGGGTGCTCTGGCTGCATAATAA
AGAGGAGTGAGTTTGTGACCCCTGTGGGTACATTGCATTTTCCTAGAAAT
CCATGTTCCTATACTCTCTCACTCTGAGACACTTCTCATGTGTTTTTTTC
CTGATAATACCTTGCTGTCACTCAGAGTCTTTCTTTACCACTTTCATTTT
ATTCCCCCCCCTCTCATTTACATCTTATTGATAAACAATCTTGTCCTCTC
TCACACAGTGCATAAGACCTTATGTTAAACATTGTATTATGTTCAGTCTT
TAATCTCTAAAAACACTGAACTTATTACTACATTTTAGAGATTCATTAAG
AATACCTATCGAATTGGATATTTAATTATTTATTCTTCTTCTTACACTCT
GGATTCTTCCAGGCATATTAAAGAAATATTAGTCCCAACTAATTATTTAA
TATGTAATTCATAATTGTAATTTAATGAATGAAAAAGATCAAATATGTAT
TAAATTTAATATTGAACAAAAATTTGAAAATTATATGCTTCTCTCACAAA
AGTGGCTACATACATTTTTAAGCACTTAAATGTCACCATTCTTTCTCATT
GAAACTTTTTTTTAATTAGTTCACACCACTTTTGTTTCCTTCATGAATTT
AACTCCCCACATAATGAAATAATTGTTGGTGCTTGCTCAGGCCCAATTAT
AAAATTCCTACTTAATATGGAATATCCCTACCCATTTTTTTTGAAAATGT
AAAATAATTTGTCTTCTGTAGAAACTTTTTTTTTAAAAAAAAAATTTTTC
CTAAAAAATGTACGCTTTTTTAAAATCTCCCTTAACCTACTTAAAAAATT
TCTCTTCTCCCCTCTAAAAATTTCTTTTCTTTAACCTTAAAATACTTTTA
AAAATACACCACATTCCCCCCCTCACTTAATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_i04.g1 MSMg01no130_i04.g1 CHROMAT_FILE:
MSMg01no130_i04.g1 PHD_FILE: MSMg01no130_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:20 2005
         (327 letters)



>mm_chr16_80327898_80328624
          Length = 727

 Score =  586 bits (303), Expect = e-172
 Identities = 321/327 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acccattatatgtgatattgctctgttttattttatgttgtgttcctgtttagaaaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 acccattatatgtgatattgctctgttttattttatgttgtgttcctgtttagaaaatat 468

                                                                       
Query: 61  gctccttaaattcctgttcttgaatagctccctttataatctgcttttccattttaccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gctccttaaattcctgttcttgaatagctccctttataatctgcttttccattttaccat 408

                                                                       
Query: 121 ttggggacccactaggctcacaaggaggctggagacaagggtgctctggctgcataataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 ttggggacccactaggctcacaaggaggctggagacaagggtgctctggctgcataataa 348

                                                                       
Query: 181 agaggagtgagtttgtgacccctgtgggtacattgcattttcctagaaatccatgttcct 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 agaggagtaagtttgtgacccctgtgggtacattgcattttcctagaaatccatgttcct 288

                                                                       
Query: 241 atactctctcactctgagacacttctcatgtgtttttttcctgataataccttgctgtca 300
           ||||||||||||||||||||||||||||||| | |   ||||||||||||||||||||||
Sbjct: 287 atactctctcactctgagacacttctcatgtatatccctcctgataataccttgctgtca 228

                                      
Query: 301 ctcagagtctttctttaccactttcat 327
           |||||||||||||||||||||||||||
Sbjct: 227 ctcagagtctttctttaccactttcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)