BAC Information

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BAC

Clone NameMSMg01-131L14
Chromosome16 (Build37)
Map Location 40,973,430 - 40,973,746
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneEG667450, Lsamp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131L14.T7 (MSMg01no131_l14.b1)MSMg01-131L14.TJ (MSMg01no131_l14.g1)
ACCAG339150AG339151
length733720
length of high quality
(start - end)
182 (80 - 261)366 (70 - 435)
definitionCHROMAT_FILE: MSMg01no131_l14.b1 PHD_FILE: MSMg01no131_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:02 2005CHROMAT_FILE: MSMg01no131_l14.g1 PHD_FILE: MSMg01no131_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGAGGC
GCGGAATTCTCACCTGATTCCTACCGAATGGCAGAGAAGCACCTGAAAAA
ATGCTCAACATCCTTAATCATCAGGGAAACGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGATTGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGTTCC
TCAGAAAACTGGATATAGTACTACCGGATTTATTCTGCAATACCTCTCCT
GGGCATATATCCAGAATATGCCCCAACTGGTAAGAAGGACACATGCTCCA
CGATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAACGAACCC
AGATGCCCCTCAACTGATGAATGGATACAGAATATGTGTTACATCCACAC
AATGGAGCACTACTCAGTCTATTTAAAAGAAATGATTTATGAAATTTCCT
GGCCTAATGGATGGACCAGGAGGGCTTTCATCCTGAGTGTGGTAACACCT
TCACAAATGAACTCTTTCTTTTTGTACTCACTGTAAATTTGTTATCTAGC
CTTATACCCTAAAATTCCCTGTATTTTATATACCATTCCCCTATACCACC
TGACCCTCCCGAAAAATGATAACCGTTCTGTGC
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTGCTTGTGAGACACGTAAGCCTTAGGGGC
AGGCACTGAAGGCTTTTTTTTTTTTTTAAATTGGTTGAGGCTGTTGGGGT
ATAATTACAACTTTTTTTTTTTTTTAAATCAAAGAAAGCCTACTACCAAA
GTGCTACAAAAGGCAAAATTTAATGGAGTTTACAGTATCTATAAAAATTG
ATTACACTTATACATGCGTGTTTTGAGCCTAAGTGATCACACACACACAC
ACACACACACACACACATTTTTTCATACACACACACACACACACACACAC
ACACACATACACACACACACACACACACACACACACACATACACACACAC
ACACACACACACACACACACACACATACACACACACACACACCCCACACA
CCACACCCCTAGACGGAATCAAATGTCTATACTGGTATACTACAAACATG
TGTAGCTGCATCTCTAAAAGTCTGTAAACATCACTTGAATAATTCAGTGC
TACATGAGACACTGTAATAAGCAGAGTCTTAACCTAATAGCTTAAACTTA
ACAAAAATTTAAATTTATTTCATTTGATTCACAACTTTACATAAAATGAC
GTGTCCTGGTAACCAGTCTCAGATTTCACAATCTGTTCTCTGTTCTCCAG
CATTTTTCTACGCTAATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_l14.g1 MSMg01no131_l14.g1 CHROMAT_FILE:
MSMg01no131_l14.g1 PHD_FILE: MSMg01no131_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:03 2005
         (366 letters)



>mm_chr16_40973331_40974094
          Length = 764

 Score =  511 bits (264), Expect = e-149
 Identities = 311/336 (92%), Gaps = 20/336 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgcttgtgag-acacgtaagccttaggggcaggcactgaaggctttttttttttttta 59
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 attgcttgtgagtacacgtaagccttaggggcaggcactgaaggctttttttttttttta 357

                                                                       
Query: 60  aattggttgaggctgttggggtataattacaacttttttttttttttaaatcaaagaaag 119
           ||||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||
Sbjct: 356 aattggttgaggctgctggggtataattacaac---tttttttttttaaatcaaagaaag 300

                                                                       
Query: 120 cctactaccaaagtgctacaaaaggcaaaatttaatggagtttacagtatctataaaaat 179
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 299 cctactaccaaagtgctacaaaaggcagaatttaatggagtttacagtatctataaaaat 240

                                                                       
Query: 180 tgattacacttatacatgcgtgttttgagcctaagtgatcacacacacacacacacacac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tgattacacttatacatgcgtgttttgagcctaagtgatcacacacacacacacacacac 180

                                                                       
Query: 240 acacacacattttttcatacacacacacacacacacacacacacacacatacacacacac 299
           ||||||            ||||||||||| ||||||||||||||||||  ||||||||||
Sbjct: 179 acacac------------acacacacacatacacacacacacacacac--acacacacac 134

                                               
Query: 300 acacacacacacacacacacatacacacacacacac 335
           ||||| ||||||||||||||| || ||||| |||||
Sbjct: 133 acacatacacacacacacacacac-cacac-cacac 100


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 188
Number of extensions: 41
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 764
Length adjustment: 9
Effective length of query: 357
Effective length of database: 755
Effective search space:   269535
Effective search space used:   269535
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)