BAC Information

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BAC

Clone NameMSMg01-133F06
Chromosome16 (Build37)
Map Location 38,130,614 - 38,130,728
singlet/doubletsinglet
Overlap geneGsk3b
Upstream geneStxbp5l, Gtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713
Downstream geneNr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133F06.T7 (MSMg01no133_f06.b1)MSMg01-133F06.TJ (MSMg01no133_f06.g1)
ACCAG340337AG340338
length707712
length of high quality
(start - end)
233 (125 - 357)115 (131 - 245)
definitionCHROMAT_FILE: MSMg01no133_f06.b1 PHD_FILE: MSMg01no133_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:07 2005CHROMAT_FILE: MSMg01no133_f06.g1 PHD_FILE: MSMg01no133_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATCTTTCCANAAAAGAAATCTCCTTGGGCTGGTGAGATGGTTCAG
CGGTTAAGAGCACTTACTCCTCTTCCAAAGGTCCTGAGTTCAAATCCCAG
CAACCACATGGTGGCTCACAACCATCCATAACGAAATCTGATGCTTTCTT
CTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATA
TTTAAAAAAAGAAATCTCCAAAAAAAAAAAAAAAAGAAAGAAATCAAGAG
TCATTACGACAATGCGGTATATCCGTGAGTGACCTGGGACCCTCCAGGCC
ACCTGTTTTTTTTTCCCCACCCCACGCCTCGTGCCTGGGCCGCCTAGAAA
GCCTAGGCAGTTGGATGAAAAGAAAAATCGGCTGGTGACTTAAATGAGCT
TTCATCTCATTTACAGGAGAAGTCCCCAAGTACTATTTTTATTTTTGCAG
GTGATTAAAGTTCACCAAAGTACGGTAACCTCCTACCTGGAAGACATCAT
ACTGAACACCGAGGAGAGAACTGCAGAGGAACAAGCCAGAAAAGAAATCG
AGAAGATCGCTGAGGAGATCAACAACATCGCTTATGAAATGGAGAACCGG
TACGCATCGTGAGGGGAGACGGAAATAGATGATGTCATAGATGACGTCGT
AGCCACT
NCGATACTGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCTGAAATCACTTTTGGAACGATGAATCGTCTTAGT
TTTCCTGTTTATCTCCAGGAATCCTTTATTCTCATCAACTCTTGCTTTCT
GCGTTTCTCTTTCTCCCATCCGTTCTGCCTCCACTGAGCATGTCTCTTCT
GTTCTTTGCCGATACATGATTATTAGTTCTATGATTGTCCTGCTAGCTAT
ACAATATTTGACAATTGGTATCCTCCCAATGGCCCTTTGGAAAATGACCG
ACCTTCAACGTCTACACGCCACATTTTTTGCCTGTGCACTGGAGAACAGT
GTTGCTTCCCTGGTCCTTACCCTTACAACTCTACGTTCCACATTTGCCTC
TTTGACCTTATTGCTTCCAGGCCACATAGCTCTCACTGCACTCTCACTCG
TCCTATATAGCTTCATCTATACCCACATATTTATATACCACTGCCACCCT
TTGTTCTCCCCTTATTTTCGCCCTTACAGCCTGTCCCCTCCCCGTTTGCT
CCTCATAACTCCAATTTATGATTTGCCTGTCTTCTTCTCTTACTTCACCT
TCCGCATCGTCTTACCTGCCCTACTCTCGCTCTTTTTTATTGCCTCCTTC
CCTTGTTACTCGACTTCTTGCTTACTGCTCTTTCTCCTCTCACCCTTCGC
TTCTCCCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_f06.g1 MSMg01no133_f06.g1 CHROMAT_FILE:
MSMg01no133_f06.g1 PHD_FILE: MSMg01no133_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:07 2005
         (115 letters)



>mm_chr16_38130414_38130928
          Length = 515

 Score =  223 bits (115), Expect = 4e-63
 Identities = 115/115 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcatcaactcttgctttctgcgtttctctttctcccatccgttctgcctccactgagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcatcaactcttgctttctgcgtttctctttctcccatccgttctgcctccactgagca 260

                                                                  
Query: 61  tgtctcttctgttctttgccgatacatgattattagttctatgattgtcctgcta 115
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtctcttctgttctttgccgatacatgattattagttctatgattgtcctgcta 315


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 115
Length of database: 515
Length adjustment: 8
Effective length of query: 107
Effective length of database: 507
Effective search space:    54249
Effective search space used:    54249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)