Query= MSMg01no134_e04.b1 MSMg01no134_e04.b1 CHROMAT_FILE:
MSMg01no134_e04.b1 PHD_FILE: MSMg01no134_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:29 2005
(792 letters)
>mm_chr16_80494693_80495882
Length = 1190
Score = 1346 bits (696), Expect = 0.0
Identities = 771/802 (96%), Gaps = 17/802 (2%)
Strand = Plus / Minus
Query: 4 atacaccactaatgagattttggcaaacctttctatgtatgagaaaacgccagggctcat 63
||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||
Sbjct: 1177 atacaccactaatgagattttggcaaagttttctatatatgagaaaatgccagggctcat 1118
Query: 64 ttatttaatataaaagtttaagaggatcatagatgatgcaccaggaaacaattctattc- 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 ttatttaatataaaagtttaagaggatcatagatgatgcaccaggaaacaattctattct 1058
Query: 123 tttccatatgtgactttaatatttttcatatcacattaatatattttataccttgaacat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 tttccatatgtgactttaatatttttcatatcacattaatatattttataccttgaacat 998
Query: 183 attctacaatcagtattttattgaataat-tccagtgcaaggaatgcagggtttttgttt 241
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 997 attctacaatcagtattttattgaataatgt-cagtgcaaggaatgcagggtttttgttt 939
Query: 242 tattttg---------tttagaaaagaatttaggtttaaaatatgacactcaaaaaatta 292
||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 938 tattttgtttgtattttttagaaaagaatttaggtttaaaatatgacactcataaaatta 879
Query: 293 agtgttatcttcagtgaaccatgagtactatgaggaaacagatgaaatatatgccctttt 352
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 878 agtgttatcttcagtgaaccatgagtactatgaggaaacagatgaaatatatgccccttt 819
Query: 353 accaaaaaaaaaaaatgtcacctaagatgtgtattatgaattccaaataaataaagtatt 412
||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 818 acc--aaaaaaaaaatggcacctaagatgtgtattatgaattccaaatgaataaagtatt 761
Query: 413 ttcttggtttgtgtatattttccacagtcacttttaaacatgaatccaagggagcataag 472
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 760 ttcttggtttgtgtatattttccacagtcatttttaaacatgaatccaagggagcaaaag 701
Query: 473 cttgaaaaaaggttaatggaagctat-aaaaaaatacagtctagaggttttgctatgaat 531
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 700 cttgaaaaaaggttaattgaagctattaaaaaaatacagtctagaggttttgctatgaat 641
Query: 532 gtatgttgtataattacaatttaattaattttgataccttgtggaggtttgaactgtgtt 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gtatgttgtataattacaatttaattaattttgataccttgtggaggtttgaactgtgtt 581
Query: 592 cctttcacccaacaaaaaatctaaccaattttaattatctaagaatatgaacataaattg 651
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 cctttcacccaacaaaaa-tctaaccaattttaattatctaagaatatgaacataaattg 522
Query: 652 caaattgttttttcgtggtttcaaatacagtagagattctagagagatgtcccaagacat 711
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 521 caaattgttttttcgtggtttcaaatatggtagagattctagagagatgtcccaagacat 462
Query: 712 ttgtgtgttatttt-gtttgcctgtttgttttgagattataatttaattatgtcatttcc 770
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ttgtgtgttatttttgtttgcctgtttgttttgagattataatttaattatgtcatttcc 402
Query: 771 cattcccctaaatttcctccaa 792
||||| ||||||||||||||||
Sbjct: 401 cattcacctaaatttcctccaa 380
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 792
Length of database: 1190
Length adjustment: 10
Effective length of query: 782
Effective length of database: 1180
Effective search space: 922760
Effective search space used: 922760
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no134_e04.g1 MSMg01no134_e04.g1 CHROMAT_FILE:
MSMg01no134_e04.g1 PHD_FILE: MSMg01no134_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:29 2005
(724 letters)
>mm_chr16_80332494_80333617
Length = 1124
Score = 1321 bits (683), Expect = 0.0
Identities = 714/725 (98%), Gaps = 4/725 (0%)
Strand = Plus / Plus
Query: 1 taatgcaatagccctcaaagttactgagcctttctatatcactttgttcgctattatttg 60
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 200 taatgcaatagccctcaaagttactgagtctttctatatcactttgtttgctattatttg 259
Query: 61 gttcttattccttaaaataataatttaatttttt-catagctctatatttgttacattga 119
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 260 gttcttattccttaaaataataatttaatttttttcatagctctatatttgttacattga 319
Query: 120 tcaaataacatattttgtcaacataattcctacatttggaaaatataacataaaagtatt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcaaataacatattttgtcaacataattcctacatttggaaaatataacataaaagtatt 379
Query: 180 ataataattgtatatctgctttatacaatgagtgtaaaacaatattctacataacaactt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ataataattgtatatctgctttatacaatgagtgtaaaacaatattctacataacaactt 439
Query: 240 gaacccccaaaatatatactgccctttatactctattccgtatattaataataacaaaag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaacccccaaaatatatactgccctttatactctattccgtatattaataataacaaaag 499
Query: 300 tttcatgaaatttatttgataaagtatctgcaagatgaaaagttccatttttttttgttt 359
||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 500 tttcatgaaatttatttgaaaaagtatctgcaagatgaaaagttccattttttt--gttt 557
Query: 360 attttgtttttgttttttgttttttttagaacatgggaaaattacaaaaaaaattacaac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 attttgtttttgttttttgttttttttagaacatgggaaaattacaaaaaaaattacaac 617
Query: 420 attttaaaactcagagactcaaaatcttcatcaaggattattgagatcatctacttaggt 479
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 618 attttaaaactcagagactcaaactcttcatcaaggattattgagatcatctacttaggt 677
Query: 480 atcaaaaagtaatcaatcttactgtaaaattgagtagatactaaacatcgtaatagacaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 atcaaaaagtaatcaatcttactgtaaaattgagtagatactaaacatcgtaatagacaa 737
Query: 540 ttgtagtctttacagaataaaacactcttaaggcatattcaaatccagctgcaaataagg 599
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 738 ttgtagtctttacagaataaaacactcttaaggcatattcaaatccagctgaaaataagg 797
Query: 600 aaaattaaagtagtctcagtgtattacagagaaccatttgagtgacttctaagccacaaa 659
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 798 aaaattaaagtagtctcagtgtattacatagaaccatttgagtgacttctaagccacaaa 857
Query: 660 atacagaaactttttataacgtatggaaggtcttcccttccctttcccttcccttccctt 719
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 858 atacagaaactttttataacatatggaaggtcttcccttccctt-cccttcccttccctt 916
Query: 720 ccctt 724
|||||
Sbjct: 917 ccctt 921
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 724
Length of database: 1124
Length adjustment: 10
Effective length of query: 714
Effective length of database: 1114
Effective search space: 795396
Effective search space used: 795396
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
