Query= MSMg01no135_i23.b1 MSMg01no135_i23.b1 CHROMAT_FILE:
MSMg01no135_i23.b1 PHD_FILE: MSMg01no135_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:43 2005
(659 letters)
>mm_chr16_44503028_44504086
Length = 1059
Score = 1210 bits (626), Expect = 0.0
Identities = 647/654 (98%)
Strand = Plus / Minus
Query: 5 gaattcatttattgtcactcccaaccggaacccacctgggatagcacactgacattcttc 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 gaattcatttattgtgactcccaaccggaacccacctgggatagcacactgacattcttc 799
Query: 65 atccaggtctaataagaaccttcctttctcttcacagatctccaggactttaaattagat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 atccaggtctaataagaaccttcctttctcttcacagatctccaggactttaaattagat 739
Query: 125 gtgcagcatgtgattgaagtagacgaggggaacacagccgtcattgcctgccacctgcct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gtgcagcatgtgattgaagtagacgaggggaacacagccgtcattgcctgccacctgcct 679
Query: 185 gagagccacccaaaagcccaggtccggtacagtgtcaaacaggagtggctggaggcctct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gagagccacccaaaagcccaggtccggtacagtgtcaaacaggagtggctggaggcctct 619
Query: 245 agaggtaaggaatgggcagggagcccaggagagctggcttctgactgctttcatttgtgt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 agaggtaaggaatgggcagggagcccaggagagctggcttctgactgctttcatttgtgt 559
Query: 305 cagctgttgctacctctctgagtccccatgataatgttgacagccccaacctcaggctag 364
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct: 558 cagctgttgctacctctctgagtccccacgataatgttgacagccccagcctcaggctag 499
Query: 365 ccagctgtcctgtactctgacatttggctctcaaagatcttaagagggcagtttccatga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ccagctgtcctgtactctgacatttggctctcaaagatcttaagagggcagtttccatga 439
Query: 425 tggagttcctccgtgctgtcatggagacttaagtcatcttggggggccctggagggtgtt 484
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 438 tggagttcctccgtgctgtcacggagacttaagtcatcttgtggggccctggagggtgtt 379
Query: 485 gccaaacgctcagcacatgactggttcctgatgctccctgttcaagcctttgtcacaagg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gccaaacgctcagcacatgactggttcctgatgctccctgttcaagcctttgtcacaagg 319
Query: 545 catgtagagaaaggctgcctgacaagcccagagtccccagaacttcaatgttccctggtg 604
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 318 catgtagagaaaggctgcctgacaagcccagagtccccagaacttcagtgttccctggtg 259
Query: 605 ggaaaggatcctcccccacatggcaaagcagtcttttggtgggactgtacagct 658
|||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 258 ggaaaggatcctcccccacacggcaaagcagtcttttggtgggactgtacagct 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_i23.g1 MSMg01no135_i23.g1 CHROMAT_FILE:
MSMg01no135_i23.g1 PHD_FILE: MSMg01no135_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:43 2005
(617 letters)
>mm_chr16_44337997_44339013
Length = 1017
Score = 1100 bits (569), Expect = 0.0
Identities = 614/649 (94%), Gaps = 32/649 (4%)
Strand = Plus / Plus
Query: 1 aataatcctagaacacttgtaaagatgaggtatggccaagaattagttccttggggcatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataatcctagaacacttgtaaagatgaggtatggccaagaattagttccttggggcatc 260
Query: 61 ctttatctcctttggactggatttatctatttttaggaaggatatgttgagtaactccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttatctcctttggactggatttatctatttttaggaaggatatgttgagtaactccaa 320
Query: 121 gctgaaactctccagctgtttgactttgcacctctaatctggggaataacaactgttgta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgaaactctccagctgtttgactttgcacctctaatctggggaataacaactgttgta 380
Query: 181 tgagtgattcagggcacaatttcccaacactgtcatgaaagaactttgtaagttctgacg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagtgattcagggcacaatttcccaacactgtcatgaaagaactttgtaagttctgacg 440
Query: 241 atatatatatatatgtgtgtgtgtgt------------------------------atat 270
|||||||||||| ||||||||||||| ||||
Sbjct: 441 atatatatatatgtgtgtgtgtgtgtgtgtatatatgtgtatatatatatatatatatat 500
Query: 271 atatatatatatatatatatatatccataactgtaggcttagaatttttaaaacctactt 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atatatatatatatatatatatatccataactgtaggcttagaatttttaaaacctactt 560
Query: 331 tcataagggttcccaaatgcttcaacaacagtgcccccccccc--caaaggtagggaaga 388
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 561 tcataagggttcttaaatgcttcaacaacagtgcccccccccctccaaaggtagggaaga 620
Query: 389 atagatagtaaataggacaagggaatgtggacctgttcagaagtagttctttgagataat 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atagatagtaaataggacaagggaatgtggacctgttcagaagtagttctttgagataat 680
Query: 449 tccaattttcatttgtccggataccagtagttcagtttaaaagagtcaccaaacacaaat 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tccaattttcatttgtccggataccagtagttcagtttaaaagagtcaccaaacacaaat 740
Query: 509 cagcaaagggaaacttgatccagcagaaaccaccaggcctccttggccagtgaccaggac 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cagcaaagggaaacttgatccagcagaaaccaccaggcctccttggccagtgaccaggac 800
Query: 569 cagtcagaatgtcaggagtttcctgctgtgcctctctctttgaagtgaa 617
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cagtcagaatgtcaggagtttcctgctgtgcctctctctttgaagtgaa 849
Score = 56.8 bits (29), Expect = 5e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 266 tatatatatatatatatatatatatatat 294
|||||||||||||||||||||||||||||
Sbjct: 509 tatatatatatatatatatatatatatat 481
Score = 56.8 bits (29), Expect = 5e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 266 tatatatatatatatatatatatatatat 294
|||||||||||||||||||||||||||||
Sbjct: 511 tatatatatatatatatatatatatatat 483
Score = 56.8 bits (29), Expect = 5e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 266 tatatatatatatatatatatatatatat 294
|||||||||||||||||||||||||||||
Sbjct: 513 tatatatatatatatatatatatatatat 485
Score = 56.8 bits (29), Expect = 5e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 266 tatatatatatatatatatatatatatat 294
|||||||||||||||||||||||||||||
Sbjct: 515 tatatatatatatatatatatatatatat 487
Score = 56.8 bits (29), Expect = 5e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 266 tatatatatatatatatatatatatatat 294
|||||||||||||||||||||||||||||
Sbjct: 517 tatatatatatatatatatatatatatat 489
Score = 56.8 bits (29), Expect = 5e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 266 tatatatatatatatatatatatatatat 294
|||||||||||||||||||||||||||||
Sbjct: 519 tatatatatatatatatatatatatatat 491
Score = 56.8 bits (29), Expect = 5e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 266 tatatatatatatatatatatatatatat 294
|||||||||||||||||||||||||||||
Sbjct: 521 tatatatatatatatatatatatatatat 493
Score = 56.8 bits (29), Expect = 5e-12
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 266 tatatatatatatatatatatatatatat 294
|||||||||||||||||||||||||||||
Sbjct: 523 tatatatatatatatatatatatatatat 495
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 266 tatatatatatatatatatatatatata 293
||||||||||||||||||||||||||||
Sbjct: 507 tatatatatatatatatatatatatata 480
Score = 54.9 bits (28), Expect = 2e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 267 atatatatatatatatatatatatatat 294
||||||||||||||||||||||||||||
Sbjct: 524 atatatatatatatatatatatatatat 497
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 116
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 11
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
