Query= MSMg01no135_p04.b1 MSMg01no135_p04.b1 CHROMAT_FILE:
MSMg01no135_p04.b1 PHD_FILE: MSMg01no135_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:11 2005
(662 letters)
>mm_chr16_95090169_95091235
Length = 1067
Score = 783 bits (405), Expect = 0.0
Identities = 435/447 (97%), Gaps = 5/447 (1%)
Strand = Plus / Minus
Query: 5 gaattctctgccttcacaca-atcacatgcttaatcctctatgacagtttgagtttcctt 63
|||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gaattctctgccttcagagatatcacatgcttaatcctctatgacagtttgagtttcctt 388
Query: 64 ccttagatttcagagttggtctcactgaggtccgtgagg----aaaaaaaaaacaacttt 119
|||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||
Sbjct: 387 ccttagatttcagagtcggtctcactgaggtccatgagggaaaaaaaaaaaaacaacttt 328
Query: 120 tccttaggctctcttcctggcatgcatattttatcattgagtgtatcacagcagtgtgtg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tccttaggctctcttcctggcatgcatattttatcattgagtgtatcacagcagtgtgtg 268
Query: 180 tatacatgcacaggcacttcacatgtgtgtgcatacatgtgtgtacacatgtgtgtgtgc 239
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 267 tatacatgcacagccacttcacatgtgtgtgcatacatgtgtgtacacatatgtgtgtgc 208
Query: 240 atacacgtgtatacatgcatttgtgtacatacatgtgtatacatgcattgtgtacatgca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 atacacgtgtatacatgcatttgtgtacatacatgtgtatacatgcattgtgtacatgca 148
Query: 300 tgtgtatacatacatgtgtgtgcatacatttggaggccagagataaacctccagcacctt 359
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 tgtgtagacatacatgtgtgtgcatacatttggaggccagagataaacctccagcacctt 88
Query: 360 ccttagttgctcacaatacccattccttcacacagaggcacttttaattctctagcagtg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87 ccttagttgctcacaatacccattccttcacacagaggcacttttaattctctagcagtg 28
Query: 420 agacaggccggctggcaggctaacctc 446
|||||||||||||||||||||||||||
Sbjct: 27 agacaggccggctggcaggctaacctc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1067
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1057
Effective search space: 689164
Effective search space used: 689164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_p04.g1 MSMg01no135_p04.g1 CHROMAT_FILE:
MSMg01no135_p04.g1 PHD_FILE: MSMg01no135_p04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:11 2005
(448 letters)
>mm_chr16_94951551_94952398
Length = 848
Score = 797 bits (412), Expect = 0.0
Identities = 439/448 (97%)
Strand = Plus / Plus
Query: 1 cttgtgaaaaatctaaggccttagcgtcagcaaactgccttctgagaatctgggcagacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgtgaaaaatctaaggccttagcgtcagcaaactgccttctgagaatctgggcagacg 260
Query: 61 cttttggggaggatgcaggtacctaagcgcaaatctctgctgccacaggggcctggcggt 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 cttttggggaggatgcaggtacctaagcacaaatctctgctgccacaggggcctggcggt 320
Query: 121 tgagcttcattttacctagagcttgggacaatcaagtcatagaagactagaatcaggctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagcttcattttacctagagcttgggacaatcaagtcatagaagactagaatcaggctg 380
Query: 181 gagagatggctcagcggttaagagaaccgactgctcttccagaggtcccaagttcaattc 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagagatggctcagcagttaagagaaccgactgctcttccagaggtcccaagttcaattc 440
Query: 241 ccggcaaccacatagtggttcacaaccatctgtaatgggatctgatgcctcttccggtgt 300
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 ccggcaaccacatagtggctcacaaccatctgtaatgggatctgatgcctcttctggtgt 500
Query: 301 gtctgaagagagcaatggtgtactcacatatataaaataagtataccgtagctgtacaga 360
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 501 gtctgaagagagcaatggtgtactcacatacataaaataagtatactgtagctgtacaga 560
Query: 361 tggttgtgagccttcatgtggttgttgggaattgaattttaggacctctgctggcgctgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggttgtgagccttcatgtggttgttgggaattgaattttaggacctctgctggcgctgg 620
Query: 421 tcggccccgctcgctccgatcaactcca 448
| | ||||||||||||| ||||||||||
Sbjct: 621 ttgtccccgctcgctccaatcaactcca 648
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
