BAC Information

Click to search

BAC

Clone NameMSMg01-137A19
Chromosome16 (Build37)
Map Location 10,588,747 - 10,729,139
singlet/doubletdoublet
Overlap gene4932416N17Rik
Upstream geneGrin2a, LOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi
Downstream geneSocs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik, Litaf, LOC100043147, LOC100042597, Snn, Txndc11, Zc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1, Tnfrsf17, 4933437K13Rik, LOC100043171
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137A19.T7 (MSMg01no137_a19.b1)MSMg01-137A19.TJ (MSMg01no137_a19.g1)
ACCAG343081AG343082
length720719
length of high quality
(start - end)		599 (47 - 645)586 (74 - 659)
definitionCHROMAT_FILE: MSMg01no137_a19.b1 PHD_FILE: MSMg01no137_a19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:37 2005CHROMAT_FILE: MSMg01no137_a19.g1 PHD_FILE: MSMg01no137_a19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,588,747 - 10,589,341)(10,728,600 - 10,729,139)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCG
GAATTCTCACTATTGCGAAGTGTATTGAAATAACAGCTCCCAAGGAAGGA
ATCAGATACCTCATCGGTAACAAGCCACAGAAATCTTCTTTGTCAGTACC
AGAATTCTTAAATGAAGAAACTTCTTGCTCTTGTTTGGATGTTTCACCTG
TTGGGCCATGGACAACCACTGGTGAGAGTGCTCACTGTGTCCATCCTAGA
GACACCGGCCCTTGGACACTCTACACTCTGGTGGTTGTGGTGTCAGACAA
GCATCATTCATCATGCCTGAGGGGAATGAGCTCTCCTGGGAGGCGGATTG
AACCACTTTCTAGAACATTCTGATGACGCATGATTAGCAGATCCTGACAG
GCCTGGCTGCTGACCACTTACTGGGCTCTCAACACCTCACCCTGGAAGGC
CTTCCTTGTATCCAGAAAACAAATTTTGAAACGTCACTGATGAGAAGATG
ATCTTAATGATCTACAGTTCCTTGCTTTCAGCTTTGGATGAGAAAATTTA
CTAAATATATACCACACAGAATCAACAGAATCAACAGCAAGAAGGGTCAG
ATGACGGCAAACATCATCCAGTCGGGGACTGTATACAACATGCAGCACAG
TAGCCTTAATGTGAGGGCGAACAAAAGCAATATCAAATTAAGGCTTTAAG
AGTACTCAGCAGAAATGGAG

CAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACAGGGACAATCAGCCACAGCTTTGC
AGTGAACTTTATTGCTGCTTACTTCTTAATCACGTACAGTGGTAAACCCC
TGAGTTTACAAGCTGTTTACTTGCCTCAAAAATGAATTACCCTGTAACAA
ATCAAAATGTCAGGTGGCTTTTCCCAAGCCGCCAATTTATCACACATACA
AACAAGCTGAGTGTTGGAGCAGTGTTGCGACTGAACTTCGTGTGCTCCTG
AATGAACATGGTGAGTGAAAAGCTGGGACCCTGAGGGGGGTCTGTCTCTA
AAGACACTGTCACATATTTAGAGTGCGATTCATGAGGGATGAGCAAGAAT
ACTAACGTTCTTTGCTGGGTGGGTGGAGCTTAGTGGCACAGCCCTTGCCT
AGCATATTAGGTTGCCCTGGGTTCTGTACCCAGGATGCTCTTTTGAAAAG
AAGACAAAAGGAAGTTCTTTAATTTGGGGGTCAGCATCAATAGACTAGTA
ATAAAATTTACATGTAATTAGAGCATGCCTACAAAGGTCAGATAACAACT
TGCAGGAGGTGGCTCTTTCCTTCTATTGTGTAGGACCTGGGCACTGAAAT
GTCATTGGCTTGTTGGTTCCAACCCTGTCCTATTTTGCAGCATAAACTGA
GTAGAGGCACTGAGAATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_a19.b1 MSMg01no137_a19.b1 CHROMAT_FILE:
MSMg01no137_a19.b1 PHD_FILE: MSMg01no137_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:37 2005
         (599 letters)



>mm_chr16_10588543_10589541
          Length = 999

 Score = 1081 bits (559), Expect = 0.0
 Identities = 586/595 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcactattgcgaagtgtattgaaataacagctcccaaggaaggaatcagatacc 64
           ||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcactacagtgaagtgtattgaaataacagctcccaaggaaggaatcagatacc 264

                                                                       
Query: 65  tcatcggtaacaagccacagaaatcttctttgtcagtaccagaattcttaaatgaagaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcatcggtaacaagccacagaaatcttctttgtcagtaccagaattcttaaatgaagaaa 324

                                                                       
Query: 125 cttcttgctcttgtttggatgtttcacctgttgggccatggacaaccactggtgagagtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttcttgctcttgtttggatgtttcacctgttgggccatggacaaccactggtgagagtg 384

                                                                       
Query: 185 ctcactgtgtccatcctagagacaccggcccttggacactctacactctggtggttgtgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcactgtgtccatcctagagacaccggcccttggacactctacactctggtggttgtgg 444

                                                                       
Query: 245 tgtcagacaagcatcattcatcatgcctgaggggaatgagctctcctgggaggcggattg 304
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 445 tgtcagacaagcatcattcatcatgcctgaggggagtgagctctcctgggaggcggattg 504

                                                                       
Query: 305 aaccactttctagaacattctgatgacgcatgattagcagatcctgacaggcctggctgc 364
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 aaccactttctagaacattctgatgacacatgattagcagatcctgacaggcctggctgc 564

                                                                       
Query: 365 tgaccacttactgggctctcaacacctcaccctggaaggccttccttgtatccagaaaac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgaccacttactgggctctcaacacctcaccctggaaggccttccttgtatccagaaaac 624

                                                                       
Query: 425 aaattttgaaacgtcactgatgagaagatgatcttaatgatctacagttccttgctttca 484
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 625 aaattttgaaacgtcactgatgagaagatgattttaatgatctacagttccttgctttca 684

                                                                       
Query: 485 gctttggatgagaaaatttactaaatatataccacacagaatcaacagaatcaacagcaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gctttggatgagaaaatttactaaatatataccacacagaatcaacagaatcaacagcaa 744

                                                                  
Query: 545 gaagggtcagatgacggcaaacatcatccagtcggggactgtatacaacatgcag 599
           ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||
Sbjct: 745 gaagggtcagatgacagcaaacatcatccagtcgggggctgtatacaatatgcag 799


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space:   582521
Effective search space used:   582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no137_a19.g1 MSMg01no137_a19.g1 CHROMAT_FILE:
MSMg01no137_a19.g1 PHD_FILE: MSMg01no137_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:37 2005
         (586 letters)



>mm_chr16_10728600_10729585
          Length = 986

 Score = 1036 bits (536), Expect = 0.0
 Identities = 539/540 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagggacaatcagccacagctttgcagtgaactttattgctgcttacttcttaatcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 cacagggacaatcagccacagctttgcagtgaactttattgctgcttacttcttaatcac 481

                                                                       
Query: 61  gtacagtggtaaacccctgagtttacaagctgtttacttgcctcaaaaatgaattaccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gtacagtggtaaacccctgagtttacaagctgtttacttgcctcaaaaatgaattaccct 421

                                                                       
Query: 121 gtaacaaatcaaaatgtcaggtggcttttcccaagccgccaatttatcacacatacaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gtaacaaatcaaaatgtcaggtggcttttcccaagccgccaatttatcacacatacaaac 361

                                                                       
Query: 181 aagctgagtgttggagcagtgttgcgactgaacttcgtgtgctcctgaatgaacatggtg 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 360 aagctgagtgttggagcagtgttgcgactggacttcgtgtgctcctgaatgaacatggtg 301

                                                                       
Query: 241 agtgaaaagctgggaccctgaggggggtctgtctctaaagacactgtcacatatttagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agtgaaaagctgggaccctgaggggggtctgtctctaaagacactgtcacatatttagag 241

                                                                       
Query: 301 tgcgattcatgagggatgagcaagaatactaacgttctttgctgggtgggtggagcttag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tgcgattcatgagggatgagcaagaatactaacgttctttgctgggtgggtggagcttag 181

                                                                       
Query: 361 tggcacagcccttgcctagcatattaggttgccctgggttctgtacccaggatgctcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tggcacagcccttgcctagcatattaggttgccctgggttctgtacccaggatgctcttt 121

                                                                       
Query: 421 tgaaaagaagacaaaaggaagttctttaatttgggggtcagcatcaatagactagtaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 tgaaaagaagacaaaaggaagttctttaatttgggggtcagcatcaatagactagtaata 61

                                                                       
Query: 481 aaatttacatgtaattagagcatgcctacaaaggtcagataacaacttgcaggaggtggc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  aaatttacatgtaattagagcatgcctacaaaggtcagataacaacttgcaggaggtggc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space:   562176
Effective search space used:   562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |