BAC Information

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BAC

Clone NameMSMg01-138C14
Chromosome16 (Build37)
Map Location 10,537,118 - 10,720,559
singlet/doubletdoublet
Overlap geneDexi, 4932416N17Rik
Upstream geneGrin2a, LOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998
Downstream geneSocs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik, Litaf, LOC100043147, LOC100042597, Snn, Txndc11, Zc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1, Tnfrsf17, 4933437K13Rik, LOC100043171
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138C14.T7 (MSMg01no138_c14.b1)MSMg01-138C14.TJ (MSMg01no138_c14.g1)
ACCAG343897AG343898
length701704
length of high quality
(start - end)		533 (65 - 597)579 (74 - 652)
definitionCHROMAT_FILE: MSMg01no138_c14.b1 PHD_FILE: MSMg01no138_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:06 2005CHROMAT_FILE: MSMg01no138_c14.g1 PHD_FILE: MSMg01no138_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,537,118 - 10,537,647)(10,719,981 - 10,720,559)
sequence
ATCAXXXXXXXXXXXXXXXXXXXXXXXXCTATCAAAGAGGACCGCGGAAT
TCTGACTTACGACAACCTTTTCCTGCCAAGATCACATCACCTGAATGGAA
TCCTGAGCTCAGACGGACACCTGACAACCCCAGGCAGAGACAGCTGGCAA
ACGCCACACCAGCCTCTTGCACATTGCCAATGTCACACCCAGACATAGAC
AGACTGAGCATTTGGTCCAGAATAAAGAAAGCAGTGACCTCAAAGCTTAC
ACACTTATCATTGAAGGACATTTCTGGGACATCAAAAGCTGTGAATAAAG
CCAGAGAGCAGAGTGCTCCTAAATCCTATCCCTGTCCAGCTGCTGATTTC
AGCCAGGTGTGGTGGCACCCAACTGTAATCCAGTGCTTGGGAGACAGAGC
AGGAGGATCCGGAGTTCTAGGCCAGTCTTGGTTATAGAAGACTCCATCTC
TAAAAACAATGACATCTTGCTGGCTTTGACAAGGACACTACAGATACCAA
GTAGATCCTTCTTTTAGGAAAACACAGACCAAAATATTCAGGACCACAGG
AACATCATGTCTGCAATGCACTCTCAAATGGTTTAGAACATGACCATTCA
CATGTGTATGTGTGTGTTCACATGCATGCATAGGTATACACAGAGGAGAA
TGTGAGCTTGCTCTTAGCAAATGAGCAGATATGCTGGCTGCCAGGCAGGC
T

NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTGTTAATTTCTGCAAAAGATGTACG
ATATACCCCCAGGGCAGACAGCCACAGGCTGGGGTTCCTTCCCATTTACT
TGTTTGCTAGGACTTGGGCTTACAGAGCAGGGTGGTTTGCTCCTGCTGTA
GCTATACCACTGAAGCTCTCCTGTGTGTGTTAACTGATTGGGGTCAGGCC
AGACTGACAGATGGCAATGTTGCCTTACACATGAATACAGAAAGAACCAA
AGATGCTATCAGCGCGGTGGTCGTTAGATGGGATCAGGGGACATGCTGAG
TCATACAAAGGCCAAGATGGCCACCAGCCCAGAGCATGCTTCCGAGGCTT
ACAGCTGCTGCTCAGTGGGCAGGGCTCTGCTGGCTTCTGCTCCTGGAGCC
CCACGACACTTGGCCAGCCAGATGGTCAGTATCTGTCATGTGCAAAGGAG
AAGTCCAGGGAGAAGCAGAAGCTCAGATAAACGACACAGGGGGAGAGGAG
TGTTCCCAGGCCTTGAGCTGCTCCTAGGTAATGTGATGTAGAAGCCCTAC
TTGCCCTGAGAGCACATGTACTAGAGACTGTATGTCCAGGCACTTGCATT
TTGACTGCTGAACTGAAAGCTGGTCTTATCAAGGCAGAACTTAATCAGCC
TTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_c14.b1 MSMg01no138_c14.b1 CHROMAT_FILE:
MSMg01no138_c14.b1 PHD_FILE: MSMg01no138_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:06 2005
         (533 letters)



>mm_chr16_10536915_10537847
          Length = 933

 Score =  978 bits (506), Expect = 0.0
 Identities = 524/530 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ttttcctgccaagatcacatcacctgaatggaatcctgagctcagacggacacctgacaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ttttcctgccaagatcacatcacctgaatggaatcctgagctcagacggacacctgacaa 263

                                                                       
Query: 64  ccccaggcagagacagctggcaaacgccacaccagcctcttgcacattgccaatgtcaca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccccaggcagagacagctggcaaacgccacaccagcctcttgcacattgccaatgtcaca 323

                                                                       
Query: 124 cccagacatagacagactgagcatttggtccagaataaagaaagcagtgacctcaaagct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cccagacatagacagactgagcatttggtccagaataaagaaagcagtgacctcaaagct 383

                                                                       
Query: 184 tacacacttatcattgaaggacatttctgggacatcaaaagctgtgaataaagccagaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tacacacttatcattgaaggacatttctgggacatcaaaagctgtgaataaagccagaga 443

                                                                       
Query: 244 gcagagtgctcctaaatcctatccctgtccagctgctgatttcagccaggtgtggtggca 303
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcaaagtgctcctaaatcctatccctgtccagctgctgatttcagccaggtgtggtggca 503

                                                                       
Query: 304 cccaactgtaatccagtgcttgggagacagagcaggaggatccggagttctaggccagtc 363
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cccaactgtaatccagcacttgggagacagagcaggaggatccggagttctaggccagtc 563

                                                                       
Query: 364 ttggttatagaagactccatctctaaaaacaatgacatcttgctggctttgacaaggaca 423
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttgattatagaagactccatctctaaaaacaatgacatcttgctggctttgacaaggaca 623

                                                                       
Query: 424 ctacagataccaagtagatccttcttttaggaaaacacagaccaaaatattcaggaccac 483
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 624 ctacagataccaagtagatccttcttttaggaaaatacagaccaaaatattcaggaccag 683

                                                             
Query: 484 aggaacatcatgtctgcaatgcactctcaaatggtttagaacatgaccat 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aggaacatcatgtctgcaatgcactctcaaatggtttagaacatgaccat 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no138_c14.g1 MSMg01no138_c14.g1 CHROMAT_FILE:
MSMg01no138_c14.g1 PHD_FILE: MSMg01no138_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:07 2005
         (579 letters)



>mm_chr16_10719781_10720759
          Length = 979

 Score = 1081 bits (559), Expect = 0.0
 Identities = 574/579 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgttaatttctgcaaaagatgtacgatatacccccagggcagacagccacaggctggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 actgttaatttctgcaaaagatgtacgatatacccccagggcagacagccacaggctggg 720

                                                                       
Query: 61  gttccttcccatttacttgtttgctaggacttgggcttacagagcagggtggtttgctcc 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 719 gttccttcccatttacttgtttgctaggacttgggcttatagagcagggtggtttgctcc 660

                                                                       
Query: 121 tgctgtagctataccactgaagctctcctgtgtgtgttaactgattggggtcaggccaga 180
           |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 659 tgctatagctataccactgaagctctcctgtgtgtgttaactgactggggtcaggccaga 600

                                                                       
Query: 181 ctgacagatggcaatgttgccttacacatgaatacagaaagaaccaaagatgctatcagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ctgacagatggcaatgttgccttacacatgaatacagaaagaaccaaagatgctatcagc 540

                                                                       
Query: 241 gcggtggtcgttagatgggatcaggggacatgctgagtcatacaaaggccaagatggcca 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gcggtgggcgttagatgggatcaggggacatgctgagtcatacaaaggccaagatggcca 480

                                                                       
Query: 301 ccagcccagagcatgcttccgaggcttacagctgctgctcagtgggcagggctctgctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ccagcccagagcatgcttccgaggcttacagctgctgctcagtgggcagggctctgctgg 420

                                                                       
Query: 361 cttctgctcctggagccccacgacacttggccagccagatggtcagtatctgtcatgtgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 cttctgctcctggagccccacgacacttggccagccagatggtcagtatctgtcatgtgc 360

                                                                       
Query: 421 aaaggagaagtccagggagaagcagaagctcagataaacgacacagggggagaggagtgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aaaggagaagtccagggagaagcagaagctcagataaacgacacagggggagaggagtgt 300

                                                                       
Query: 481 tcccaggccttgagctgctcctaggtaatgtgatgtagaagccctacttgccctgagagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tcccaggccttgagctgctcctaggtaatgtgatgtagaagccctacttgccctgagagc 240

                                                  
Query: 541 acatgtactagagactgtatgtccaggcacttgcatttt 579
           ||||||||| |||||||||||||||||||||||||||||
Sbjct: 239 acatgtactggagactgtatgtccaggcacttgcatttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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