BAC Information

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BAC

Clone NameMSMg01-141C07
Chromosome16 (Build37)
Map Location 12,214,444 - 12,215,128
singlet/doubletsinglet
Overlap gene2700045P11Rik
Upstream geneGspt1, Tnfrsf17, 4933437K13Rik, LOC100043171, C530044N13Rik
Downstream geneEG622509, LOC622553, Ercc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141C07.T7 (MSMg01no141_c07.b1)MSMg01-141C07.TJ (MSMg01no141_c07.g1)
ACCAG346096AG346097
length1,0581,250
length of high quality
(start - end)		34 (36 - 69)753 (95 - 847)
definitionCHROMAT_FILE: MSMg01no141_c07.b1 PHD_FILE: MSMg01no141_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:13 2005CHROMAT_FILE: MSMg01no141_c07.g1 PHD_FILE: MSMg01no141_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGACCGGGGNNNCCATTGGCGCTATAGACTCCTAAGGGAGAGGATCCGCG
GAATTCTGTTTAGATCTGGGGCCATTCAGGGGCNNNANNANNNAGNNNGN
NGANGNNNAGNCCATTAAAAGGNNNANANANNNNGAANANNAANNGNNAG
ANGNGGAGNNGGNGAAAAANNNNNNANNNAGGGCCCAGNNANNGNGNNNA
ANNGANGGNANNNNNNGNNNNANAGAAGNNNNNNAGNNNNANGAANNNNN
ANNNANNAANGGNNGANNNNAGNGNNNGNGNNANNAGNNGNNNGNNNAGG
AAGNNGNNNNNGGNANNAAGGANAGATTAANNNNAGNAAAGGNNNNNAGN
AAGGGAGAANANGGANNNGGAANAGGNNANNNNNGGNAANNAGGTTTTTT
TTNAAGNGGAGGAANNGGAANANNAANNGAGAAAAAAAANCCCCCCCCNA
NGGNGAGNCCGGCCNNCAGAGGGNNCNGGGACNGGAGACAAGGGGAANGG
NCANCCAAGAGACCAGAGAGACNNCAGGCAGCAACAGAGGGGAACAGAAA
CAGACAACGACCACAGCCAAACANAAGACAGAGCNNCAGAAGNCNGNGGA
GGAGGGGGAGGAAGGANNGGNGGNNNNNNNNNNNNNGANNNNNNNNGGNN
NNNGNGGNGGGGGGGGGGGGGGGGGGGGGGNGNGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGG
GGGGGGNGGGGGGNTTGGNGGGGGGGNGGGGGGGGGGGGGGGGGGGGGGG
GGGGGNGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGNGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGNGGGGGGGGGGGG
GGGGGGGNGGGNGGGGGGGAGAGAGGGGGGAGGGGGAGNGAGGAAGGAAG
GAAGGGAAGAAGAGAGAAGAAAGAAAAGAAAAAAGAAAAGAGAAAAAGAG
GGAGAAAAGGGAAAGAGAAAAAAAAAAAAAAAAAAAAAGAAGAAGAGAAG
GGGAAAAA

NNCCCATTCTTTTTNNTAAGAGGGNAGNCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAATGTCAAAACTA
GAGGAAATATTGGGCATCACAAGCCGTAGAAGTAAAGATACAGAACAAGC
TCAAGCCAGGATTAAAACCTGCAACACACAAAATAATCATGTACACTGAA
CTGGCTTCAAAGATTCTAAGATGAAAATACTGGGGAAAGTAAATACTGGT
GATCTGAAAACCAGAGTAATAGAATCAATTAAAATGAACCAATGAGGGGC
TGAGGAAGTGGCCTGAGCATGAGTCTCTTGCCTGGTGGGCTTAGTCCCAA
GTATTGGATGGATTTTTATGACATTGATTCATTTATTTACTGTGTGCACT
CAGAACCCACCTAGAAGAGACAGCTTCTCTCATTCTACCAGTGGGTTTAG
GAGGAACAAGCCCAGGTCATTACACATGTGGCAAGTACCTTCACCTTTTT
ATCCCTCTTCCTGTCCCATAAAAATGGTTTTTAAAAATAAAACTGTGAAG
AATAGTGCCATTGAGCTGCAGGATGCAGCTGAGGAGAAACAGAAAGACAG
AACTAGAAAACGATTGATTATGAATTAATTAATGATGAACCATTATGAAA
AATATTATGGAAACTATACACTCCAGATCCAAGAAGACTAGCACACAAAT
ACCAGAAACATAAAGAAGACTACAGGGAAACAAATGAGAACCAAATTTTT
GGAAATCAATGATATAGACTAAAACTTTAAAGATAGACAGAGTCATAAAA
GAAGAAGGCAGCATTCTTAACAGAGATACTGCAACCCAAAGACAAACCTC
TAGATATCGATTGTGCAAACATGTTCATATTATGCTAGGCTATTGGTGCA
TTGCAGAATTATATTACGAAGTAGAAAACAGGGAAGTGTCCGCTCCTGTC
ATATAGGGTCATATAAAAATAAGGTGTATGCTTGAAAGCCCGGGCGGGGT
TGTTGTACCCCCTGTAATCCAAGCACTTTGGAAAAAATAGGCCCGGGGGG
ATTCAGAAGTTATAGGAAAACCCCCCGGTTCCCTAAAAAACCTTCCTGAA
AAAAAAAAAAGGGTGTTGGAAAAAAAAAGTAATACTTTTCTTTCTTCTTT
CCTCACTCTTTCCCTACTTTCATCTTCCTCTTCTAATCTACATTTCTCTT
TTTAACTCCCTACACTTTCTAGAACATTCACTTATCTCTGCTACTACTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_c07.g1 MSMg01no141_c07.g1 CHROMAT_FILE:
MSMg01no141_c07.g1 PHD_FILE: MSMg01no141_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:13 2005
         (753 letters)



>mm_chr16_12214444_12215595
          Length = 1152

 Score = 1265 bits (654), Expect = 0.0
 Identities = 678/688 (98%), Gaps = 5/688 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaactagaggaaatattgggcatcacaagccgt--agaagtaaagatacagaacaagctc 58
           ||||||||||||||||||||||||||||   ||  |||||||||||||||||| ||||||
Sbjct: 685 aaactagaggaaatattgggcatcacaa---gtggagaagtaaagatacagaaaaagctc 629

                                                                       
Query: 59  aagccaggattaaaacctgcaacacacaaaataatcatgtacactgaactggcttcaaag 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aagccaggattaaaacctgcaacacacaaaataatcatgtacactgaactggcttcaaag 569

                                                                       
Query: 119 attctaagatgaaaatactggggaaagtaaatactggtgatctgaaaaccagagtaatag 178
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 568 attctaagatgaaaatactggtgaaagtaaatactggtgatctgaaaaccagagtaatag 509

                                                                       
Query: 179 aatcaattaaaatgaaccaatgaggggctgaggaagtggcctgagcatgagtctcttgcc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aatcaattaaaatgaaccaatgaggggctgaggaagtggcctgagcatgagtctcttgcc 449

                                                                       
Query: 239 tggtgggcttagtcccaagtattggatggatttttatgacattgattcatttatttactg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tggtgggcttagtcccaagtattggatggatttttatgacattgattcatttatttactg 389

                                                                       
Query: 299 tgtgcactcagaacccacctagaagagacagcttctctcattctaccagtgggtttagga 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tgtgcactcagaacccacctagaagagacagcttctctcattctaccagtgggtttagga 329

                                                                       
Query: 359 ggaacaagcccaggtcattacacatgtggcaagtaccttcacctttttatccctcttcct 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ggaacaagcccaggtcattacacatgtggcaagtaccttcacctttttatccctcttcct 269

                                                                       
Query: 419 gtcccataaaaatggtttttaaaaataaaactgtgaagaatagtgccattgagctgcagg 478
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 268 gtcccataaaaatggtttttaaaaataaaactgtgaaaaatagtgccattgagctgcagg 209

                                                                       
Query: 479 atgcagctgaggagaaacagaaagacagaactagaaaacgattgattatgaattaattaa 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 atgcagctgaggagaaacagaaagacagaactagaaaacgattgattatgaattaattaa 149

                                                                       
Query: 539 tgatgaaccattatgaaaaatattatggaaactatacactccagatccaagaagactagc 598
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 148 tgatgagccattatgaaaaatattatggaaactatacactccagatccaagaagactaac 89

                                                                       
Query: 599 acacaaataccagaaacataaagaagactacagggaaacaaatgagaaccaaatttttgg 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88  acacaaataccagaaacataaagaagactacagggaaacaaatgagaaccaaatttttgg 29

                                       
Query: 659 aaatcaatgatatagactaaaactttaa 686
           ||||||||||||||||||||||||||||
Sbjct: 28  aaatcaatgatatagactaaaactttaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 753
Length of database: 1152
Length adjustment: 10
Effective length of query: 743
Effective length of database: 1142
Effective search space:   848506
Effective search space used:   848506
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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