BAC Information

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BAC

Clone NameMSMg01-142D03
Chromosome16 (Build37)
Map Location 21,159,830 - 21,259,918
singlet/doubletdoublet
Overlap geneEphb3
Upstream geneYeats2, LOC100043459, Map6d1, Parl, EG224044, Abcc5, Eif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274, EG625060, LOC625123, LOC676915, 2310042E22Rik
Downstream gene6430590I03Rik, Vps8, 2510009E07Rik, Ehhadh, LOC100043489, LOC546659, Map3k13, LOC624037, Tmem41a, Liph, Senp2, EG239760, Igf2bp2, EG545152, EG666421, Sfrs10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142D03.T7 (MSMg01no142_d03.b1)MSMg01-142D03.TJ (MSMg01no142_d03.g1)
ACCAG346869AG346870
length1,2171,239
length of high quality
(start - end)		729 (95 - 823)486 (131 - 616)
definitionCHROMAT_FILE: MSMg01no142_d03.b1 PHD_FILE: MSMg01no142_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:01:33 2005CHROMAT_FILE: MSMg01no142_d03.g1 PHD_FILE: MSMg01no142_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:01:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(21,259,422 - 21,259,918)(21,159,830 - 21,160,315)
sequence
NCCGGCCCTNNNNNNNAGCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGGAACTGAGATCATGCCATTAGATCTCTACAGTGTT
CTAAAGCCAAGCTTCATATCCCTTCCTTTGCCCCCATAGCTAAAGCCCAC
GTGTCACCCCATACCCTGACCTCACGTCACCCCATTTCACGGATATGCCT
GGGGACATTTGTGGGCACACAGATGTGAGACTTCCAGGTTGACCCAGCCA
CAGGGTATTCTATCTTGCTCCCATTGAGGACAGGAATGGTCTCACAGCAT
GTCTGCTCTCACCCCATACTGAGAAGAAAAAGTAAAAGATCCCAGTATGT
GCCTGATATTTTACAGGCAGCTTGTAAGCTTAATTATGGGTTTTTTCTTT
CTTGAAATTAAAATATAATTACATCATTTCCCCCTTTACTTTCCTGCTTC
CAGCCCCTCCTATGTACCCCGTCCTTGCTTTCTCTTAGATTCATAAAATA
AATATGATATATGATTATGACATATATGATTATGATATATGTTATATAAT
TGATATATTATGATTAATAATATAATATATAGTATATAGCATATCATATA
CATAAACACAGAATGCATAGCATGCTTTGTATATATATTTCTGCCCCCTC
CTCGGTGATGCTCCTTGAGTTGTTTTAGATGTATCACTTGGGGCTGGGCA
CACCAGAGTCACCTGTGCTCTGCATTTTGATTGGTTGTGGTTTTCTGTAA
CAGTATCTATCCAACAAGGCCTTGACACAAGCTGTGTAGAACCTGGCTGA
GAGGAGAGCCTGGGACTCCTGGGGGAGCCTGTGGGTTGTTTTTCTTGATT
TAGGTTTTAAAAGTCAGGCATGGGCTGAGGATGTAACTTGAAGGTAGAAT
TGTACCTAGCTTGTGTGAAACCTTGCGTCCACCTCCAGAACTTTTTTTTC
CCCCCAGAAGCTGAAATTTTGTATGGGATTTGCTGGAACGCCCTAAAACC
CCTCACTAATTTGGGCCGATTTAAAAATCCCTCCCTTTGTGGCCAAAAAA
AAAAATCCTGGTTCTAACCCTCTCTAAACCCACCTACTCTTTGTGTTATT
ATATTCCCTAAAATTTTTTATTTCTAACCCCTTCTAAATCCCTAAACTTC
TAAATACCTTTTTTTTTCCTCTAAACTTCTATTTTTCTATCTTTTTGTAA
AAAAAACCTACATTTTT

NCAACCCTTTTTNNTAACATGGGAXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTATATCCCTCACATGCAGAA
CACATGACTATGCCCAAGCCGTTTTGGTATCAATTTTGCCGGTGGTGGTG
GTGGTGGTTTTTCAAGACAGGTTTTCTCTATGGTAGACAATGTCTGTCAT
GGAACTCACCTTGTAGACCAGGGTGGCATTGAACTCAGAGACTTTCCTTC
CTCTGCCTCCTGACTCCTGGGATTAAAGCTTGTATCATGATTCCTGCAAG
TCTCTTTGTAAACCAGGCTGGCCTCAAAGTCACAGAGATCTGTCTGACTC
TGCCTCTCTAGGGCAGGGATTCAAGGTGTGAGCCACCACTGCCCAGGTGA
TGTTAGTGATTTTTAATAGGATACTATATGTAATAAACATTTGATAGATG
GTAGCAATTATTAATTTACTTATGTTTTTATTTAAATGTGACTTTTCTGA
GAGTTTCATACCTGAACATTGTATTTATATTATTTCTTTCCCATTATTTC
TCACCCCTCTCCTACTCCTACTGTGTCCTCTTCCTGTTCCTTCTAAAATT
ATTATTGTTACACCCAAACACACGTATAGAAAAGGGCACACGAGGACATT
GGTGTTAGGGAAGGGAAAATGGAAATGGGAGGTTAGGTATAAATATTTTT
GCTTTTTATTTTCTTTCTTATTTTTGTATATTTTTTTTATCTTTTATACT
TACTATTTGTTTCTTTATATCTTTCCTATTTATTTTTCTATTATACCCTT
TATAATTCTCAACTCTTTTTATTCTTCTCTCATACTACCTTTCTTTTTTC
TCATATATTACATTCTCTATTACTCCATCTCATCTAATTTACTTATATCC
TCATCCTTCTCCTTTTCATCCTTTTTTTTATATCTTCATATACCTTTTTA
ATTTTTATTTTTTTCTTCTCTTTATTCTTCTTTTTTTCTTTCTTCCTTTA
TTTTTTTTACTTTTATCTTTTATTTCTTTCTTCTCTTTTTCTTTCTTCTT
ACTTTGTTTTTCATCACCTTATGCACTCGCTATCTTCTTTTTTCGCCATT
CACTATCTCACTTTTTATACTATTATTTCTATATCATTTCCCTAATCTTC
TCCAATTTATATTTCCTAATTTTCATTCTTCCTTACTATATACTATTATC
TCACTTACATCTAATCTCCCTATACTCTTATCTTTGTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_d03.b1 MSMg01no142_d03.b1 CHROMAT_FILE:
MSMg01no142_d03.b1 PHD_FILE: MSMg01no142_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:33 2005
         (729 letters)



>mm_chr16_21259422_21260550
          Length = 1129

 Score =  938 bits (485), Expect = 0.0
 Identities = 494/497 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgttctaaagccaagcttcatatcccttcctttgcccccatagctaaagcccacgtgt 60
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 497 agtgttctaaagccaagcttcatatcccaccctttgcccccatagctaaagcccacgtgt 438

                                                                       
Query: 61  caccccataccctgacctcacgtcaccccatttcacggatatgcctggggacatttgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 caccccataccctgacctcacgtcaccccatttcacggatatgcctggggacatttgtgg 378

                                                                       
Query: 121 gcacacagatgtgagacttccaggttgacccagccacagggtattctatcttgctcccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gcacacagatgtgagacttccaggttgacccagccacagggtattctatcttgctcccat 318

                                                                       
Query: 181 tgaggacaggaatggtctcacagcatgtctgctctcaccccatactgagaagaaaaagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tgaggacaggaatggtctcacagcatgtctgctctcaccccatactgagaagaaaaagta 258

                                                                       
Query: 241 aaagatcccagtatgtgcctgatattttacaggcagcttgtaagcttaattatgggtttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aaagatcccagtatgtgcctgatattttacaggcagcttgtaagcttaattatgggtttt 198

                                                                       
Query: 301 ttctttcttgaaattaaaatataattacatcatttccccctttactttcctgcttccagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 ttctttcttgaaattaaaatataattacatcatttccccctttactttcctgcttccagc 138

                                                                       
Query: 361 ccctcctatgtaccccgtccttgctttctcttagattcataaaataaatatgatatatga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ccctcctatgtaccccgtccttgctttctcttagattcataaaataaatatgatatatga 78

                                                                       
Query: 421 ttatgacatatatgattatgatatatgttatataattgatatattatgattaataatata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 77  ttatgacatatatgattatgatatatgttatataattgatatattatgattaacaatata 18

                            
Query: 481 atatatagtatatagca 497
           |||||||||||||||||
Sbjct: 17  atatatagtatatagca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 729
Length of database: 1129
Length adjustment: 10
Effective length of query: 719
Effective length of database: 1119
Effective search space:   804561
Effective search space used:   804561
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no142_d03.g1 MSMg01no142_d03.g1 CHROMAT_FILE:
MSMg01no142_d03.g1 PHD_FILE: MSMg01no142_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:33 2005
         (486 letters)



>mm_chr16_21159630_21160515
          Length = 886

 Score =  855 bits (442), Expect = 0.0
 Identities = 475/486 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   caattttgccggtggtggtggtggtggtttttcaagacaggttttctctatggtagacaa 60
           ||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caattttggtggtggtagtggtggtggtttttcaagacaggttttctctatggtagacaa 260

                                                                       
Query: 61  tgtctgtcatggaactcaccttgtagaccagggtggcattgaactcagagactttccttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtctgtcatggaactcaccttgtagaccagggtggcattgaactcagagactttccttc 320

                                                                       
Query: 121 ctctgcctcctgactcctgggattaaagcttgtatcatgattcctgcaagtctctttgta 180
           ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 ctctgcctcctgattcctgggattaaagcttgtatcacgattcctgcaagtctctttgta 380

                                                                       
Query: 181 aaccaggctggcctcaaagtcacagagatctgtctgactctgcctctctagggcagggat 240
           |||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 381 aaccaggctggcctcaaattcacagagatctgtctgcctctgcatctctagggcagggat 440

                                                                       
Query: 241 tcaaggtgtgagccaccactgcccaggtgatgttagtgatttttaataggatactatatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcaaggtgtgagccaccactgcccaggtgatgttagtgatttttaataggatactatatg 500

                                                                       
Query: 301 taataaacatttgatagatggtagcaattattaatttacttatgtttttatttaaatgtg 360
           |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 501 taataaacatttgatagatggtagtaattattaattttcttatgtttttatttaaatgtg 560

                                                                       
Query: 361 acttttctgagagtttcatacctgaacattgtatttatattatttctttcccattatttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acttttctgagagtttcatacctgaacattgtatttatattatttctttcccattatttc 620

                                                                       
Query: 421 tcacccctctcctactcctactgtgtcctcttcctgttccttctaaaattattattgtta 480
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 621 tcacccctctcctactcctactgtgtcctcttcctcttccttctaaaattattattgtta 680

                 
Query: 481 caccca 486
           ||||||
Sbjct: 681 caccca 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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