Query= MSMg01no146_b23.b1 MSMg01no146_b23.b1 CHROMAT_FILE:
MSMg01no146_b23.b1 PHD_FILE: MSMg01no146_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:31 2005
(732 letters)
>mm_chr16_39939278_39940409
Length = 1132
Score = 1377 bits (712), Expect = 0.0
Identities = 727/732 (99%), Gaps = 1/732 (0%)
Strand = Plus / Plus
Query: 1 tttgttcaattgtttgctgtataatccacataaatttatatgtaccatagggtttttctt 60
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 202 tttgttcaattgtttgctgtataatctacataaatttatatgtactatagggtttttctt 261
Query: 61 agtttttgtactcctcttccattgttattaggatacaagggctgattccagtttttttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agtttttgtactcctcttccattgttattaggatacaagggctgattccagtttttttgt 321
Query: 121 agttgagttttacgtcatgaccaaatatatgattcactggagaatggtccatgggcttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 agttgagttttacgtcatgaccaaatatatgattcactggagaatggtccatgggcttct 381
Query: 181 aagaagaatatatttggcagtatttgggtggatgttcattagatacctgttaatttcagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aagaagaatatatttggcagtatttgggtggatgttcattagatacctgttaatttcagt 441
Query: 241 ggatttgtcatctcatttaatttgaatacttctacatatattttttttttgttgggaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 442 ggatttgtcatctcatttaatttgaatacttctacatatattttttttt-gttgggaaaa 500
Query: 301 atctatcaattatttggagtgtgaaattgaagtcacccactgctattctactagatttaa 360
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atctatcaattagctggagtgtgaaattgaagtcacccactgctattctactagatttaa 560
Query: 361 tctgtgtctttacatgtaatggtatttgttttatataattgagttcacttatgttcaggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctgtgtctttacatgtaatggtatttgttttatataattgagttcacttatgttcaggg 620
Query: 421 cacatatgattatagtctcttgtactcttgatggactgtcccagtattctgtgtaaggtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacatatgattatagtctcttgtactcttgatggactgtcccagtattctgtgtaaggtg 680
Query: 481 gccttccttatgtttattattcaccagttaattcaaaggctatattgttagatattagaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gccttccttatgtttattattcaccagttaattcaaaggctatattgttagatattagaa 740
Query: 541 caacaacacatacttgttacttaggttcttttactttaaatatatcctttccatctttcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caacaacacatacttgttacttaggttcttttactttaaatatatcctttccatctttcc 800
Query: 601 atgttgtgttatggtctgtctctgttgctctccctatgtatgatctcacctccatccact 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atgttgtgttatggtctgtctctgttgctctccctatgtatgatctcacctccatccact 860
Query: 661 cctctcctcatctcttcctccacccaaatttcctccttccatcctcagatctccattatc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 cctctcctcatctcttcctccacccaaatttcctccttccatcctcagatctccattatc 920
Query: 721 tattttgttttc 732
||||||||||||
Sbjct: 921 tattttgttttc 932
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 732
Length of database: 1132
Length adjustment: 10
Effective length of query: 722
Effective length of database: 1122
Effective search space: 810084
Effective search space used: 810084
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no146_b23.g1 MSMg01no146_b23.g1 CHROMAT_FILE:
MSMg01no146_b23.g1 PHD_FILE: MSMg01no146_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:31 2005
(623 letters)
>mm_chr16_40093748_40094770
Length = 1023
Score = 1158 bits (599), Expect = 0.0
Identities = 617/623 (99%)
Strand = Plus / Minus
Query: 1 tggcaacttaccgaaaaatagattacttaagaaggagaaataagatgcatgcataacaca 60
|||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 823 tggcaacttaaagaaaaatagattactcaagaaggagaaataagatgcatgcgtaacaca 764
Query: 61 gatatgtaagttcagctcagatttgaagtgaaatgggtgagtctatggagttggcagcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 gatatgtaagttcagctcagatttgaagtgaaatgggtgagtctatggagttggcagcca 704
Query: 121 tcttggccactgggcagtaatgggtgtttctcatcatgcttccttccctaacactcaccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 tcttggccactgggcagtaatgggtgtttctcatcatgcttccttccctaacactcaccc 644
Query: 181 aatagaatgtccaacaatatgccattaccattaagtgctgcaagcattcacctcttcctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aatagaatgtccaacaatatgccattaccattaagtgctgcaagcattcacctcttcctt 584
Query: 241 gggaagttcttcttgtcttctgtgattgatttcccattaaaaattctccagtagtagaga 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 583 gggaagttcttcttgtcttctgtgattgatttcccattaaaaattcaccagtagtagaga 524
Query: 301 gttttggaagacataagaaaaatctgtccagtaactttcattaatcaaaacataagaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gttttggaagacataagaaaaatctgtccagtaactttcattaatcaaaacataagaaca 464
Query: 361 ttatttactcgttccctggagtgacatgtttgtgccctaccccagagtttaataccttgc 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ttatttactcattccctggagtgacatgtttgtgccctaccccagagtttaataccttgc 404
Query: 421 tttcttttccctacctatcacctccctactctaaggagaacaatttcctcagagccatca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tttcttttccctacctatcacctccctactctaaggagaacaatttcctcagagccatca 344
Query: 481 aacacatcacactgtgccatcagcctgtacaaggatgttttttaaaaggcaatgtctgaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aacacatcacactgtgccatcagcctgtacaaggatgttttttaaaaggcaatgtctgaa 284
Query: 541 tatgacaaatgacatcagccccgtgtttggcagggtcacagccaaagctgaatctgatat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tatgacaaatgacatcagccccgtgtttggcagggtcacagccaaagctgaatctgatat 224
Query: 601 ttacagtatgctttataaaacca 623
|||||||||||||||||||||||
Sbjct: 223 ttacagtatgctttataaaacca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
