BAC Information

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BAC

Clone NameMSMg01-146P23
Chromosome16 (Build37)
Map Location 82,199,233 - 82,199,632
singlet/doubletsinglet
Overlap genenone
Upstream geneNcam2, LOC621470, LOC435484, Pgk1-ps1
Downstream geneEG665260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146P23.T7 (MSMg01no146_p23.b1)MSMg01-146P23.TJ (MSMg01no146_p23.g1)
ACCAG350388AG350389
length1,1611,167
length of high quality
(start - end)
400 (412 - 811)699 (84 - 782)
definitionCHROMAT_FILE: MSMg01no146_p23.b1 PHD_FILE: MSMg01no146_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:27 2005CHROMAT_FILE: MSMg01no146_p23.g1 PHD_FILE: MSMg01no146_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCAGTCTTTNNAAAATCACTGGGCGCTAACACTCCTAAGGGAGAGGATC
CGCGGAATTCCCTGGCAATGGCCACCATTTAAAACCCTNCTGANGGGNCA
TTTATTAAANAAGGCCCTTTTTAAATCCCTGAGNATGCTTTCTATTTCAA
GCAGAGCTACATGGCAACACTATGAATTAGTTTCTTTGAATTATCTGAAA
AAGTGACCAATTTTCAAAGTGACCCACATCAAAGAACAATTGCACAAAAT
ATGGAAATAATTAATATACTTAAAACCATTAGCATTTGCCTACTTGGAAC
GTGCAATTAAAAAAAATCAAGAAAATTCTGTATAAGAGTAGCTAAGCATA
GTTAGAATAATGGAAACAATCACCTAGGCTTTTTGTGAAACAAAGATGAA
GAATTTTATGCACACAAAGCAATTAGCTATTTGTGAGTGTGCATGTGAAT
ATAAATTAAATGTAAACCCTACATAAGTGAAGACACAGTTGGTTCAGTTT
ATGTCAGTGGCACTCCTGGGTTTGTATTAACTTCTCATTTCCTCTCACTT
CCTCACTGCCGCTGGTTTTCATGGGTGGTTTATAATTCATCATTACATCC
AGTGAAGCATGTGGCTCCTTCTAGATGTTCAAAATAAAATGCATGGTCTG
AGACTACAGAACTAAATATGGGCCTTTCCTCACAATCAGGGTATTATTTT
CACCAATCTCTTGGAGGCTTCAGCCTCAACAACCTTTACAGATCATCAGC
ACTGTCAAATGCATTTAGGAAGACAGTTAATAGGGCCTAGGCAGCTGCAA
CAGTAAAGAATGAGAGCTTGCTGGTTTTAACTGTTAAATGCAGGATTCGT
TTGGTAGTGAGACAATCAATAAGTGACATATTCATTATTTTCATATAAGT
CTAGTTTAAGTGGTGCACAGAGAAGAAAAATTCTACCTTCTTTTTAGTTC
AACCAGCATGGAAACTTGTTTTTGAAAAGAATGAAGGATTTAATATTGAG
TGTACAAACAATAAAACTTCATTTTCTGAACTTCAGGTTTACTTGCCCCC
CCCCCCATGGACCTGGNCCAACCCCTTCATCTATACTCACTTCTTCAGGG
GGAGAAATTATAAAAAATGGGAAAAAAAACTCCACACAATTCCTATCTTG
TCTAGAAAACC
NCCAAACATTTTNAAAAAGATGTGAGGCGGCXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAAGCCTGATAAACAGCTTC
AATGAATTAGCTGGACATAAAATTAACTCAAACACCCCAACNGGCCTTTC
TGTACACAAAGGATAAAGAGGCTGAAAAAGAAATTAGGGAAACATCACCC
TTCTCAATAGTCACAAATAATATAAAATGCCTTGGCTTGACTCTAACTAA
GGAAGTGAAAGATCTGTATGATAAGAACTTCAAATCTCTGAAGAAAGAAA
TTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGAATGGC
AGGATCAATATAGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATT
CAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAATGAATTAGAAA
GGGCAATCTCCAAAATGCATTGGTTGTTGAGGGAACACACAAGATAATGC
TGACAGTAGTGGAGGTGATAGAGGCCTAGCTTATGGAGTTTCAGAAATTT
GAGAGTCCTTTAAAGAATTTACTTGGGCCCTTGAATGAAAGGGCCCAAGT
ATTCTATGGTGTCTGGTCCATTGGAGCTCTGGTGTTGGGAATAAGTAACA
GGAGACCAATCCCAATGAAGTAAAGCATTTGCTTTACTAAGGCATTTAAT
GCTGGTTAGATGGAGCTGATAAATTCCTGTGGGGGGGGGGGAGGAACAAA
ACAAACAAACAAACCAACCATAATCATGGTGACAATGTCTTGTGGTAAGT
GTTAGAAATGGCAACCAAGCTTCGTTCAGTGGCTTTGCTGGCCAAGGCAT
TTTTCTGAATTATCTGAAGCTTATGTAGATGAATCTATGATACATGCAGA
AGGAGGTTTCACTCATAAAATATATACAGACAATGGAATCAATATGAGTG
TGGGTCTACATGTGTTATAAGGCCATGAGGTTCTTCTTTCCCAACTACAA
AGAAAATAACGAAAATCCAAAATAAGAATTGTCCCATGCCCCCTACCTTA
AAGACCCCCTAAGACCTGGAATTGGGTTCCCTTCCGTGGAAAAATGGGTT
TTTTCCCCGCTGGCGTGGGGGCAAAAGTGTTAAAAAAAAAATAGCCTCCT
TAAAATGGTTCCCCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_p23.b1 MSMg01no146_p23.b1 CHROMAT_FILE:
MSMg01no146_p23.b1 PHD_FILE: MSMg01no146_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:27 2005
         (400 letters)



>mm_chr16_82199033_82199832
          Length = 800

 Score =  704 bits (364), Expect = 0.0
 Identities = 391/400 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacaaagcaattagctatttgtgagtgtgcatgtgaatataaattaaatgtaaacccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 acacaaagcaattagctatttgtgagtgtgcatgtgaatataaattaaatgtaaacccta 541

                                                                       
Query: 61  cataagtgaagacacagttggttcagtttatgtcagtggcactcctgggtttgtattaac 120
           ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 540 cataagtgaagacacagttggttcaatttatgtcagtggcgctcctgggtttgtattaac 481

                                                                       
Query: 121 ttctcatttcctctcacttcctcactgccgctggttttcatgggtggtttataattcatc 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 480 ttctcatttcctctcacttcctcgctgccgctggttttcatgggtggtttataattcatc 421

                                                                       
Query: 181 attacatccagtgaagcatgtggctccttctagatgttcaaaataaaatgcatggtctga 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 420 attacatccagtgaagcatgtggctccttctacatgttcaaaataaaatgcatggtctga 361

                                                                       
Query: 241 gactacagaactaaatatgggcctttcctcacaatcagggtattattttcaccaatctct 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gactacagaactaaatatggccctttcctcacaatcagggtattattttcaccaatctct 301

                                                                       
Query: 301 tggaggcttcagcctcaacaacctttacagatcatcagcactgtcaaatgcatttaggaa 360
           |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 300 tggaggcttcagcctcaacaacttttacagatcatcagcactgtcaaatggatttaggaa 241

                                                   
Query: 361 gacagttaatagggcctaggcagctgcaacagtaaagaat 400
           | ||||||| ||||||||||||||||||||||||||||||
Sbjct: 240 gtcagttaaaagggcctaggcagctgcaacagtaaagaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)