BAC Information

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BAC

Clone NameMSMg01-149G01
Chromosome16 (Build37)
Map Location 40,993,752 - 40,994,202
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneEG667450, Lsamp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149G01.T7 (MSMg01no149_g01.b1)MSMg01-149G01.TJ (MSMg01no149_g01.g1)
ACCAG352111AG352112
length712703
length of high quality
(start - end)
552 (75 - 626)44 (261 - 304)
definitionCHROMAT_FILE: MSMg01no149_g01.b1 PHD_FILE: MSMg01no149_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:37 2005CHROMAT_FILE: MSMg01no149_g01.g1 PHD_FILE: MSMg01no149_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGG
AATTCCTTCATAAGTTCCTATATTCAAATATTTGGTTCCCAGTGGTAGAA
CCCTTTGGGAGGGAACAGAAATTAGGTATGTCTGTGGGAAAGGTTTCAAA
TCTCATGGTATCCCAAGTTTGCCCTCTCTGCCTCTTACTTGTGGATAAGT
ATGTCAGTTCTCAGTTACTGCTCTATCATTATGTCAGTCTGCTTCCTACC
GCAACCCCCGCCATGATGATCATGGACTTTAACCTTTGCAGCTGGGAGTC
TAAAATTAAAAGTCTTCTTTTATAAGTTACCTTGGCCACATTATTTGTCA
TGGCAATGGAAAATTAACTAAGGCAGGTGCTAATTTTGTCACTTTGATGG
AGTCTCGGATCAACTAAAATTTGCTTTTTTTGGAATCTGCAATGGTGTCA
TGTATGAATTAACAAGAGCTAGTAGACTATCATCCAGAATGGACACTATG
CAGCTCAGATATAAAGGGGGCCCTGATAAGCAGCTATTGCCTTATTCTGA
CTTTCTTAGTGCCTTGTAAACGAATGCTTTTAGCCTGTTGCTGTTTTTTA
GGTGCTACCCTCCATTGACATCCAAGCTTAATTCCTTCTCTATTCTAAAG
TTGAGTGAACATTACTGTTTCTTTGAGAAATCTCTAGGGAACAACTCAGG
ACATCTAAAATN
CATGATAGGCGAGGCCTGGNGGNNGTTGGTTTATTTAACCCGANAANNAN
AGAAGGATTATTTNNGACGCAGGGGAGGAAACCGAAGGGNAGAGAAGCAC
CGGAAAAAAGGCACACATCCTCAANCANCAGGGAAAGGCAAANCAAAACA
ACCCGGAGAGNCCACCNCACACCAGNCAGAAGGGCNAAGAACAAAAANCC
AGGGGACAGCAGAAGCNGGCGGGGANGNGGAGAAAGAGGAACACCCCNCC
ATTGTTGGNGGGATTGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGG
CGCCTCCTCCCAACACTCTTTTTTTTACNACCGGAGGANCCAGCAAAACC
CCNCCGGGGNANANCCCCCCAACAGGCCCCAACGGGNAAGAAGGACACAG
GCNCCACGAAGNNCANAGCAGCCCNAAAAAAAANAGCCAGAAGCNGGAAG
GAACCCAGAAGCCCCCCAACAGAGGAAGGGANACAGAAGAAGGGGNACAN
CNACACAAGGGAGAACAACNCAGCNANNAAAAAGAAGGAANNNANGAAAA
GCCGGGCCAAAGGGAGGGACCNGGAGGGCAACANCCCGAGNGAGGNAACA
CANNCACAAAGGAACNCACACAAAAAGAACCCACGGAAAAGGGGAAANAA
GCCCCAAACTTTATATTCCCAAGAGATAAGATACAATTCTCCCACGCACA
CGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_g01.b1 MSMg01no149_g01.b1 CHROMAT_FILE:
MSMg01no149_g01.b1 PHD_FILE: MSMg01no149_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:37 2005
         (552 letters)



>mm_chr16_40993251_40994202
          Length = 952

 Score =  803 bits (415), Expect = 0.0
 Identities = 442/451 (98%)
 Strand = Plus / Minus

                                                                       
Query: 102 ctctgcctcttacttgtggataagtatgtcagttctcagttactgctctatcattatgtc 161
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 ctctgcctcttacttgtggataagtatgtcagttctcagttactgctctatcattatgtc 893

                                                                       
Query: 162 agtctgcttcctaccgcaacccccgccatgatgatcatggactttaacctttgcagctgg 221
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||
Sbjct: 892 agtctgcttcctaccgcaacccccgccatgatgatcacagactttaacctttgcaactgg 833

                                                                       
Query: 222 gagtctaaaattaaaagtcttcttttataagttaccttggccacattatttgtcatggca 281
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 gagtctaaaattaaaagtcttcttttataagttaccttggccacattatttgtcatggca 773

                                                                       
Query: 282 atggaaaattaactaaggcaggtgctaattttgtcactttgatggagtctcggatcaact 341
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 772 atggaaaattaactaaggcaggtgctaattttgtcaatttgatggagtctcggatcaact 713

                                                                       
Query: 342 aaaatttgctttttttggaatctgcaatggtgtcatgtatgaattaacaagagctagtag 401
           || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 712 aagatttgctttttttggaatctgcaatggtgttatgtatgaattaacaagagctagtag 653

                                                                       
Query: 402 actatcatccagaatggacactatgcagctcagatataaagggggccctgataagcagct 461
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 accatcatccagaatggacactatgcagctcagatataaagggggccctgataagcagct 593

                                                                       
Query: 462 attgccttattctgactttcttagtgccttgtaaacgaatgcttttagcctgttgctgtt 521
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 attgccttatcctgactttcttagtgccttgtaaacgaatgcttttagcctgttgctgtt 533

                                          
Query: 522 ttttaggtgctaccctccattgacatccaag 552
           |||||| ||||||||||||||||||||||||
Sbjct: 532 ttttagttgctaccctccattgacatccaag 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)