BAC Information

Click to search

BAC

Clone NameMSMg01-149N12
Chromosome16 (Build37)
Map Location 66,133,561 - 66,133,719
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672931, Pou1f1, Chmp2b, EG383186, Vgll3, LOC664846
Downstream geneLOC100039035, Cadm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149N12.T7 (MSMg01no149_n12.b1)MSMg01-149N12.TJ (MSMg01no149_n12.g1)
ACCAG352452AG352453
length719727
length of high quality
(start - end)
384 (43 - 426)158 (76 - 233)
definitionCHROMAT_FILE: MSMg01no149_n12.b1 PHD_FILE: MSMg01no149_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:15 2005CHROMAT_FILE: MSMg01no149_n12.g1 PHD_FILE: MSMg01no149_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCCGCGG
AATTCTCACCTGACGAATACCGAATGGCAGAGAAGCACCTGAAAAAATGC
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAGGCTTGTACAACCACTCTGGAGATCAGTCTGGCGGTTCCTCAG
AAAACTGGATATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAAGATGTGGTACATCTACACAATGG
AGTACTACTCTGTTATTATAAAGAATGAATTTATGAAATTCCTGGCCAAT
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAG
GAACTCACACAATATGCACTCACTGACCAGTGTACATTATCCCTAAACCT
AATATACCCTATACATTAGATACAATTTCCTAAACACATGAAACTCTTGA
TAAATGAAGACTGATCCGN
TTCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCCTGGGCACGTGTGAATTGTACC
TGGAGCATTTCACCCCCATACCGGCTGCTGATCAAGGCTTCTCAATGCTG
AATCTTGACCCTGAATCTCAGTTTTATGATGACAGTTCCTGGTATCTACT
GGCTGGGGGAGGGGGGTGTTTTGTTTTTCTTGTAGTCAGATTATTAGCTT
CGTGCCATTATCAACCCTGCATTCACTTATTGTGCGATCGTGGCATGTCA
CGTCTCCACTGACATTCTCTTTTCAGATGGAATCACGGCCACAACTCACT
CATCATTCTTTTCGCGAGCCGATCCTGCTTTATTAAGATCCTATTCACCT
ACCTTTTCTGTTTTTCCACGAATACATATCTCATCTAATCTTGTTTCCAC
AATACCTCTCCAATCCCTGCTTTCTTTATCGATGATATCCTACGCTTCCT
GCTTTATTGCCTCACACCCCTTATTTGAGTCCGCTATTTCTTCTGCTTTT
TTTTTGCAACTTTTATAACCCTATTTTCCTTATCCTCCACCTCTACATTT
CCACTCCTCGACCCCAACCCTACATGTTATCTTTTTTCCCCCCATCCCTC
CTCTTTCTTCCCCGTCTTTCTTTTTCCCCCTGCCGTCTTTCCCCTTCTTT
TTTTCCACTCTCTTCCCTCCCCTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_n12.g1 MSMg01no149_n12.g1 CHROMAT_FILE:
MSMg01no149_n12.g1 PHD_FILE: MSMg01no149_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:15 2005
         (158 letters)



>mm_chr16_66133361_66133919
          Length = 559

 Score =  300 bits (155), Expect = 3e-86
 Identities = 158/159 (99%), Gaps = 1/159 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccctgggcacgtgtgaattgtacctggagcatttcacccccataccggctgctgatcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccctgggcacgtgtgaattgtacctggagcatttcacccccataccggctgctgatcaa 260

                                                                       
Query: 61  gg-cttctcaatgctgaatcttgaccctgaatctcagttttatgatgacagttcctggta 119
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggcttctcaatgctgaatcttgaccctgaatctcagttttatgatgacagttcctggta 320

                                                  
Query: 120 tctactggctgggggaggggggtgttttgtttttcttgt 158
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctactggctgggggaggggggtgttttgtttttcttgt 359


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 559
Length adjustment: 8
Effective length of query: 150
Effective length of database: 551
Effective search space:    82650
Effective search space used:    82650
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)