BAC Information

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BAC

Clone NameMSMg01-151A04
Chromosome16 (Build37)
Map Location 39,658,185 - 39,658,466
singlet/doubletsinglet
Overlap genenone
Upstream geneCdgap, B4galt4, LOC100043289, Upk1b, 4930435E12Rik, Igsf11
Downstream geneLOC667400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151A04.T7 (MSMg01no151_a04.b1)MSMg01-151A04.TJ (MSMg01no151_a04.g1)
ACCAG353294AG353295
length742803
length of high quality
(start - end)
---284 (75 - 358)
definitionCHROMAT_FILE: MSMg01no151_a04.b1 PHD_FILE: MSMg01no151_a04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:43 2005CHROMAT_FILE: MSMg01no151_a04.g1 PHD_FILE: MSMg01no151_a04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACACCCCTAAGGCCCTTACCCCATAAAAAAAAATCCTAATTCTCG
AGTCTTGTGGTGGACATCCATTATCTCCTGGTGTTCCGCAGGTCTGTCAT
GAAACTACCTGCATGTAATTACATCAAGGCCGTCTATTCATGATTCTTTG
GATGCACACCAAATCGCTAATTAGAGTGGGGGTTTCCCCACTATATTCTA
TCAGAACCTCTGGTGGAATCACCATGTCTGACCTAAAGATGCACTACAGA
TGAATTGTGATAAAAAACTGCATGGTACTGATATAGCGACAGACAACTAG
ACCAATGGAATACAATTGAACACCCACAAATGAGCCCACACACCTATGGT
CACTTGATATATGACCACCCAGATAGCACCATCCAGTGAACTAAAGACAG
CATTTTCAACAAATGTTACTGATGCTACTGTGACTTATCATGTAAAAGAA
TGTGAATTGATCCATTCCTATCTCCTTGTGCTAGCGACACATCTATATGA
ATCACGGACCTCTACATAAAACCAGACAACGGGAAAGACCGTGAAACTTA
TTGAGGACAAAGAGCGTAACAGCCTCCCATATATGTACCCAGGATTAAAA
ATTCCTGAATAGAACAGAAATGTTGTGCGCTATATGATTGACAATAGCAA
TATGCCGACCTCATAAAATTCGCAAGCCTTATGTAACGCCAN
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTGAATACTTCCTCAAAACAAGACT
GAAAGAAACAAGCTGATTCCAAATAATTCAATTAACCAAAGCATTTTGAT
TAGGAGAAAAATAAAGTACCCCATTGTAAAAATTTTAAAATCTTGCTCAA
ATTTAAAAAAATTACAGTCAGTTTTCTCTAAAAGTATAGCTCCTGGTAAG
TTGACCAAACTCCGGTGGAAGACCCCACAGCCAAGAATATGTGGGGAGCA
CAACTTGTTCTTGTGGGTGGGTAGGAAATAAAGGGGTCTAGGGAGAGTTG
GGGGATGCCCCCCTTTTTTCTTTTTCCCCCCTTCCCCCCCCCCCCCCTCC
TCTCCCCCCCCCTCTTTTTCCCCCCCCCCCCCCANTTTTTTTCCTATATA
ACNTCACCCCCCCCCTCACCTTTCTCCCCACAATGGCCCACCCCTGACCC
ATCCGCCGTACCACCGCTCCTTACCCCCCCTATTCTCCCCCTCCCCATAC
TCTCCATACCCCCCCCCTTTCCTGCCACCTTTTCCCCCCCCTCCCTCTTC
TTCCGCTCCCACCCCCCCCTATATTACCCCCTCCTTTACCCTCCTCCCCG
CCCTCTACCCTATTCTCCCCTCCCCTTTTTATTCGCCCTCCTCCCCCTTC
TCTCCCTCTCCCCACCCCCCTGATTTACCACCCCTCTTTCCGTAATAGGC
ACACCGACGCCCCCCTGTGTCTCTCTCCCCCAAAACCGCCCAGAACCCCT
GAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_a04.g1 MSMg01no151_a04.g1 CHROMAT_FILE:
MSMg01no151_a04.g1 PHD_FILE: MSMg01no151_a04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:43 2005
         (284 letters)



>mm_chr16_39657985_39658669
          Length = 685

 Score =  514 bits (266), Expect = e-150
 Identities = 279/284 (98%), Gaps = 3/284 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgaatacttcctcaaaacaagactgaaagaaacaagctgattccaaataattcaatta 60
           ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 201 actgaatacttcctcaaaacaggactgaaagaaacaggctgattccaaataattcaatta 260

                                                                       
Query: 61  accaaa-gcattttgattaggagaaaaataaagtaccccattgtaaaaattttaaaatct 119
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accaaaagcattttgattaggagaaaaataaagtaccccattgtaaaaattttaaaatct 320

                                                                       
Query: 120 tgctcaaatttaaaaaaattacagtcagttttctctaaaagtatagctcctggtaagttg 179
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctcaaatttaaaaaaatta--gtcagttttctctaaaagtatagctcctggtaagttg 378

                                                                       
Query: 180 accaaactccggtggaagaccccacagccaagaatatgtggggagcacaacttgttcttg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 accaaactccggtggaagaccccacagccaagaatatgtggggagcacaacttgttcttg 438

                                                       
Query: 240 tgggtgggtaggaaataaaggggtctagggagagttgggggatg 283
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgggtgggtaggaaataaaggggtctagggagagttgggggatg 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 685
Length adjustment: 9
Effective length of query: 275
Effective length of database: 676
Effective search space:   185900
Effective search space used:   185900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)